agglomeration functions and na.rm (#658)

microbiome · Nov 15, 2024 · c4ac515 · c4ac515
1 parent 56cce49
commit c4ac515
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: mia
 Type: Package
-Version: 1.15.4
+Version: 1.15.5
 Authors@R:
     c(person(given = "Tuomas", family = "Borman", role = c("aut", "cre"),
              email = "[email protected]",

diff --git a/NAMESPACE b/NAMESPACE
@@ -289,7 +289,9 @@ importFrom(DelayedArray,DelayedArray)
 importFrom(DelayedArray,colSums)
 importFrom(DelayedArray,getAutoBPPARAM)
 importFrom(DelayedArray,rowSums)
+importFrom(DelayedArray,rowsum)
 importFrom(DelayedArray,setAutoBPPARAM)
+importFrom(DelayedArray,type)
 importFrom(DelayedMatrixStats,colMeans2)
 importFrom(DelayedMatrixStats,colQuantiles)
 importFrom(DelayedMatrixStats,colSums2)
@@ -375,7 +377,6 @@ importFrom(rbiom,unifrac)
 importFrom(rlang,":=")
 importFrom(rlang,sym)
 importFrom(scuttle,sumCountsAcrossFeatures)
-importFrom(scuttle,summarizeAssayByGroup)
 importFrom(stats,TukeyHSD)
 importFrom(stats,anova)
 importFrom(stats,as.dist)

diff --git a/NEWS b/NEWS
@@ -159,3 +159,4 @@ computation
 
 Changes in version 1.15.x
 + subsetBy*: added update.tree argument
++ agglomerateBy*: Add na.rm option for excluding NA counts