Update tree agglomeration #1098
Annotations
5 errors and 11 warnings
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Run neurogenomics/rworkflows@master
could not find function "has.singles"
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R CMD check found ERRORs
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BiocParallel errors
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Test failures
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Run neurogenomics/rworkflows@master
Process completed with exit code 1.
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Run neurogenomics/rworkflows@master
unable to access index for repository https://www.bioconductor.org/packages/3.21/data/annotation/bin/windows/contrib/4.5:
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Run neurogenomics/rworkflows@master
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5:
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Run neurogenomics/rworkflows@master
unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/windows/contrib/4.5:
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Run neurogenomics/rworkflows@master
multiple methods tables found for 'setequal'
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Run neurogenomics/rworkflows@master
replacing previous import 'BiocGenerics::setequal' by 'S4Vectors::setequal' when loading 'IRanges'
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Run neurogenomics/rworkflows@master
replacing previous import 'BiocGenerics::setequal' by 'S4Vectors::setequal' when loading 'GenomeInfoDb'
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Run neurogenomics/rworkflows@master
replacing previous import 'BiocGenerics::setequal' by 'S4Vectors::setequal' when loading 'GenomicRanges'
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Run neurogenomics/rworkflows@master
replacing previous import 'BiocGenerics::setequal' by 'S4Vectors::setequal' when loading 'XVector'
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Run neurogenomics/rworkflows@master
replacing previous import 'BiocGenerics::setequal' by 'S4Vectors::setequal' when loading 'SummarizedExperiment'
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Run neurogenomics/rworkflows@master
replacing previous import 'BiocGenerics::setequal' by 'S4Vectors::setequal' when loading 'S4Arrays'
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "Linux-biocversion-devel-r-auto-results", "macOS-biocversion-devel-r-auto-results", "Windows-biocversion-devel-r-auto-results".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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