Code

Joss edits#212

Code

Merged

mdtanker merged 142 commits intomainmdtanker/polartoolkit:mainfrom joss-editsmdtanker/polartoolkit:joss-editsCopy head branch name to clipboardJun 14, 2024

+22,531-63,939

Commits

Commits on Jun 14, 2024

• chore: increase timeout for test shen moho

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• build: explicitly specify tqdm as dependency

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• docs: update contributing guide

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• chore: cleanup Make commands

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• docs: simplify binder env

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• refactor: update np random number generator

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• chore: update ruff version in pre-commit

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• style: reformat with new ruff version

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• docs: remove python version and nodefaults from binder env

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• docs: fix issues with subplot_layout example

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• docs: try nbgitpull link for launch binder buttons

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• docs: switch binder env to separate repo, remove launch buttons

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• docs: conform fetch walkthrough to standard figure creation style

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• chore: add tests for regions

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• style: fix regions test styling

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• style: add typing to function

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• docs: add available dataset gallery

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• docs: update dataset gallery template

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• docs: update bedmap2 dataset notebook

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• docs: add bedmachine dataset notebook

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• fix: remove faulty layer name from fetch bedmachine

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• docs: mention dataset gallery in fetch walkthrough

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• docs: update references

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• docs: add more dataset notebooks

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• docs: reorganize available dataset gallery

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• chore: don't run tests on docs or style commits

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• feat: add Arctic/Greenland to utils/maps

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• feat: add some Greenland regions

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• feat: add fetch MODIS Greenland

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• feat: add pen kwarg to show_region

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• fix: load deepbedmap instead of returning string

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• docs: edit some docstrings

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• docs: add more dataset notebooks

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• fix: change greenland region slightly

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• feat: add BAS greenland groundingline

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• feat: add subset grid function

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• chore: change default profile map cmap

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• feat: add hemisphere arg to most plotting functions

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• chore: change arg image to modis

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• chore: add greenland coast version to plotting functions

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• fix: correctly center interactive map

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• feat: add inset map option for greenland

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• chore: misc fixes

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• feat: allow passing .cpt file to colorbar histogram

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• fix: improve creation of colormap

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• feat: add function for combined min max of several grids

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• docs: rerun all docs

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• docs: add modis mog to index

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• chore: fix test

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• refactor: change default point color in plot_profile

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• fix: warning about histogram if grid is constant value

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• feat: enable passing single grid to plot_3d

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• fix: update figure shifting of plot_3d

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• fix: update warning about grid region extract in plot_3d

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• feat: add cbar_perspective arg to plot_3d

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• refactor: remove default vlims for plot_3d

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• feat: add cbar_labels kwarg to plot_3d

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• refactor: changed default shading to false in plot_3d

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• refactor: set cbar position in plot_3d

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• refactor: use new set_cmap function in plot_3d

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• docs: rerun notebook

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• docs: add GHF to dataset gallery

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• docs: use full citations in dataset gallery

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• docs: add GIA to dataset gallery

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• docs: add gravity to dataset gallery

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• docs: add ice velocity to dataset gallery

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• docs: add magnetics to dataset gallery

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• docs: add mass change to dataset gallery

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• docs: add groundline to dataset gallery

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• docs: add geomap geology to dataset gallery

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• style: auto style fixes

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• docs: add basal melt rate to dataset gallery

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• docs: add measures ice boundaries to dataset gallery

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• style: auto style fix

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• style: fixes for pylint

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• docs: add rosetta grav/mag to gallery datasets

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• chore: pre-commit autoupdate to monthly

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• docs: clarify project scope and goals

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• docs: clarify all mentions of format of region tuples

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• fix: remove support for fetch ROSETTA grav and mag to align with goal of only providing common and widespread datasets

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• fix: remove fetch basement due to limited spatial extent of data

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• refactor: rename fetch measures_boundaries to antarctic_boundaries

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• feat: add bedmachine data from Greenland

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• feat: add geoid for Greenland and change geoid region for Antarctica

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• fix: for bedmachine grids, restore correct registration type and only resample after geoid added to grids

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• chore: update tests for bedmachine with reference change

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• feat: add function to extract default hemisphere

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• refactor: if available, use environmental variables for setting hemisphere throughout code

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• refactor: use environment variable for setting hemisphere in profile

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• refactor: log info instead of error in mask_from_shp

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• docs: rerun notebooks

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• feat: enable greenland support for profiles

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• style: auto fixes

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• chore: update use of pylint

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• build: set min pylint version

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• refactor: remove unnecessary verbose and kwargs for some fetches

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• style: ignore pylint warnings

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• style: fix cmap issues in plot_profile

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• refactor: add hemisphere and remove kwargs from call to geoid

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• fix: specify hemisphere in bedmap2 reference test

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• chore: exclude some md files from pre-commit

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• build: include environment.yml file as backup for issues with installing

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• docs: consolidate and update install instructions

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• docs: add release instructions to contributing guide

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• docs: add instructions for EarthData login

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• docs: add missing links

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• feat: add mass change for Greenland

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• chore: update fetch mass change test

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• feat: add etopo data for the arctic/greenland

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• feat: add ice velocity for Greenland

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• refactor: combine fetch modis_moa and modis_mog to modis

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• build: add deprecation package to dev deps

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• chore: add deprecations to old fetch modis functions

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• chore: add deprecation to old fetch measures boundaries function

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• style: style fixes

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• build: move deprecation from dev to normal dependencies

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• docs: merge arctic and greenland dataset gallery

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• refactor: move alter_region from utils to regions

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• feat: add region_ll_to_xy function

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• fix: properly set default region in basemap

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• feat: add points option to basemap

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• fix: remove alter region from get_regions

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• docs: major overhaul of docs structure to follow the Divio system

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• style: auto style fixes

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• fix: fix tests for deprecations

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• fix: remove hash from mass_change

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• fix: fix fetch ice vel issue

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• refactor: update deprecated pandas delim_whitespace

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• fix: fix deprecated test alter region

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• fix: fix deprecated test measures boundaries

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• docs: rerun all dataset gallery notebooks

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• chore: add codecov token

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• chore: mark some tests as earthdata

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• docs: add logo to README

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• chore: add fetch mark to some tests

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• chore: don't run fetch calls during test

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• docs: spelling mistake

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• chore: remove pip local install in testing CI

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• chore: switch CI from mini-conda to micromamba

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• chore: enable caching of test CI environment

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• refactor: change module name from profile to profiles to match plural style of other modules.

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• docs: typo and readme update

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