readflux

Synopsis: Read the AdvanceSyn model objects file and print out fluxes (productions and usages) of model objects.

Usage: python astools.py readflux [option]

where [option] can be

• modelfile: Relative path to the model specification file.
• mtype: Type of model specification file. Allowable types are 'ASM' (AdvanceSyn Model Specification), 'MO' (AdvanceSyn Model Objects). Default = 'ASM'.

For example:

python astools.py readflux --mtype=ASM --modelfile=models/asm/glycolysis.modelspec

Working example:

D:\Dropbox\MyProjects\astoolkit>python astools.py readflux --mtype=ASM --modelfile=models/asm/glycolysis.modelspec
Name|Productions|Usages
glucose|NIL|r1
atp|r7; r10|r1; r3
adp|r1; r3|r7; r10
proton|r1; r3; r6|r10
nad|NIL|r6
pi|NIL|r6
nadh|r6|NIL
water|r9|NIL
g6p|r1|r2
f6p|r2|r3
f16p|r3|r4
gadp|r4; r5|r6
dhap|r4|r5
bpg13|r6|r7
pg3|r7|r8
pg2|r8|r9
pep|r9|r10
pyr|r10|NIL
hk.rna|e1.rna|NIL
hk|e1|NIL
pgi|NIL|NIL
pfk|NIL|NIL
aldo|NIL|NIL
tpi|NIL|NIL
gapdh|NIL|NIL
pkg|NIL|NIL
pgm|NIL|NIL
eno|NIL|NIL
pk|NIL|NIL