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feat: Temporary fix for issues #239 and #250 (wrong PRDM10 line in th…
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…e GenCC file) v3.4.4
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lgmgeo committed Sep 5, 2024
1 parent 6c3e439 commit d20fd35
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4 changes: 2 additions & 2 deletions Makefile
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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TCLDIR := $(SHAREDIR)/$(TCLVERSION)
PYTHONDIR := $(SHAREDIR)/python3
ANNOTSV := AnnotSV
VERSION := 3.4.3
VERSION := 3.4.4
RM := /bin/rm
RMDIR := /bin/rmdir
MKDIR := install -d
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2 changes: 1 addition & 1 deletion bin/AnnotSV
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#!/usr/bin/env tclsh

############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# An integrated tool for Structural Variations annotation #
# #
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For more details, please see the README file.

September, 05, 2024, AnnotSV version 3.4.4
- Temporary fix for issues #239 and #250 (wrong PRDM10 line in the GenCC file)
=> Code to be removed after updating annotations

August, 29, 2024, AnnotSV version 3.4.3
- New definition of alias gene symbols used in OMIM annotation files.
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14 changes: 7 additions & 7 deletions share/doc/AnnotSV/Example/test_GRCh37.annotated.example.tsv

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14 changes: 7 additions & 7 deletions share/doc/AnnotSV/Example/test_GRCh37.annotated.example.vcf

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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-benignsv.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-clingen.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-closestgenes.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-config.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-cosmic.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-cytoband.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-encodeblacklist.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-exac.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-exomiser.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-extann.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-filteredVCF.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-gap.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-gccontent.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-gencc.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-general.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-genes.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-haploinsufficiency.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-omim.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-pathogenicsnvindel.tcl
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.3 #
# AnnotSV 3.4.4 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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