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v3.4.3
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@lgmgeo
lgmgeo committed Aug 29, 2024
1 parent 306a931 commit 6c3e439
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4 changes: 2 additions & 2 deletions Makefile
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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TCLDIR := $(SHAREDIR)/$(TCLVERSION)
PYTHONDIR := $(SHAREDIR)/python3
ANNOTSV := AnnotSV
VERSION := 3.4.2
VERSION := 3.4.3
RM := /bin/rm
RMDIR := /bin/rmdir
MKDIR := install -d
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2 changes: 1 addition & 1 deletion bin/AnnotSV
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#!/usr/bin/env tclsh

############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# An integrated tool for Structural Variations annotation #
# #
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For more details, please see the README file.


, 2024, AnnotSV version 3.4.3
August, 29, 2024, AnnotSV version 3.4.3
- New definition of alias gene symbols used in OMIM annotation files.
Keep only aliases found with the NCBI_gene_ID and validated with genomic locations
- Add a new check for the variantconvert configuration (issue 246)
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118 changes: 59 additions & 59 deletions share/doc/AnnotSV/Example/test_GRCh37.annotated.example.tsv
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-benignsv.tcl
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-clingen.tcl
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-cosmic.tcl
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-cytoband.tcl
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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2 changes: 1 addition & 1 deletion share/tcl/AnnotSV/AnnotSV-exomiser.tcl
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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############################################################################################################
# AnnotSV 3.4.2 #
# AnnotSV 3.4.3 #
# #
# AnnotSV: An integrated tool for Structural Variations annotation and ranking #
# #
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