Rename subject_id to patient_id for meds

[justin13601]

Summary by CodeRabbit

• New Features
  • Implemented conditional column renaming in the results based on the data standard "meds" before saving to a Parquet file.

[coderabbitai]

Walkthrough

The recent change involves modifying the main function in __main__.py of the aces package. Specifically, if the cfg.data.standard is set to "meds," the functionality now includes renaming a column in the DataFrame before saving the results to a Parquet file. This ensures the column names align correctly with the specified data standard.

Changes

Files	Change Summary
src/aces/__main__.py	Added logic to rename a column in the resulted DataFrame based on cfg.data.standard condition.

Poem

🐰✨
In the heart of code, a column named anew,
For meds we prepare, a change comes through.
To Parquet it goes, with standards held tight,
Data's transformation, from morning 'til night.
Code flows like a stream, with purpose so grand,
In the realm of aces, we take a strong stand.
✨📊

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[codecov]

Codecov Report

Attention: Patch coverage is 50.00000% with 1 line in your changes missing coverage. Please review.

Files with missing lines	Patch %	Lines
src/aces/__main__.py	50.00%	1 Missing ⚠️

Files with missing lines	Coverage Δ
src/aces/__main__.py	94.28% <50.00%> (-2.69%)	⬇️

[coderabbitai]

Actionable comments posted: 1

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between c0713cb and bd4911e.

Files selected for processing (1)

• src/aces/main.py (1 hunks)

Additional context used

GitHub Check: codecov/patch

src/aces/__main__.py

[warning] 49-49: src/aces/main.py#L49
Added line #L49 was not covered by tests

Additional comments not posted (1)

src/aces/__main__.py (1)

48-50: The conditional check and renaming are efficiently integrated into the data processing workflow. Ensure that cfg.data.standard is always lowercase or handled case-insensitively to avoid bugs.

Tools

GitHub Check: codecov/patch

[warning] 49-49: src/aces/main.py#L49
Added line #L49 was not covered by tests

[coderabbitai]

The column renaming logic is clearly implemented. However, this line is not covered by tests, which is crucial for ensuring that the renaming works correctly under all conditions.

+ # Suggestion to add tests covering this specific renaming logic

Committable suggestion was skipped due to low confidence.

Tools

GitHub Check: codecov/patch

[warning] 49-49: src/aces/main.py#L49
Added line #L49 was not covered by tests

[justin13601]

Closes #60