[MRG]: Add cell parameters in GUI #806
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kmilo9999
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kmilo9999
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| @@ -220,7 +234,7 @@ | |||
| "metadata": {}, | |||
| "outputs": [], | |||
| "source": [ | |||
| "gui._simulate_left_tab_click(\"Network connectivity\")" | |||
| "gui._simulate_left_tab_click(\"Network\")" | |||
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I think we're going to move away from the automatically generated GUI documentation so not necessary to update this file (no need to remove this change of course)
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I think one of the tests fails if the 'Network Connectivity' tab title changes but it's not updated in the notebook.
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Looks like the test is failing here: |
hnn_core/gui/gui.py
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| dendrite_sections = [ | ||
| 'apical_trunk', 'apical_1', 'apical_tuft', 'apical_oblique', | ||
| 'basal_1', 'basal_2', 'basal_3' | ||
| ] |
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| dendrite_sections = [ | |
| 'apical_trunk', 'apical_1', 'apical_tuft', 'apical_oblique', | |
| 'basal_1', 'basal_2', 'basal_3' | |
| ] | |
| dendrite_sections = [name for name in sections.keys() if name != 'soma'] |
This list is actually missing apical_2 so perhaps it's better to just loop over the section names
| connectivity_names = ( | ||
| 'Layer 2/3 Pyramidal', 'Layer 5 Pyramidal', 'Layer 2 Basket', | ||
| 'Layer 5 Basket') | ||
| cell_connectivity = Accordion(children=connectivity_boxes) |
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Was this somehow redundant or being unused? I see that you're using add_connectivity_tab to setup the connectivity, but that function already existed before this PR
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I dont think it was being used at all. That variable only exists during the scope of that function.
kmilo9999
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This is all good on my end @kmilo9999, really amazing work here!!
@gtdang feel free to merge if everything looks good to you
hnn_core/tests/test_gui.py
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| for cell_layer in layers: | ||
| key = f'{cell_type} Pyramidal_{cell_layer}' | ||
| assert (any(key in k for k in keys)) | ||
| num_cell_params = num_cell_params + 1 |
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| num_cell_params = num_cell_params + 1 | |
| num_cell_params += 1 |
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| assert (len(keys) == num_cell_params) | ||
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| # Check the if the cell params dictionary has been updated |
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| # Check the if the cell params dictionary has been updated | |
| # Security check for if parameters have been added or removed from the cell | |
| # params dict. Any additions will need mappings added to the | |
| # update_{*}_cell_params functions |
hnn_core/gui/gui.py
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| for vbox_key, cell_param_list in cell_params_vboxes.items(): | ||
| for key, update_function in update_functions.items(): | ||
| if key in vbox_key: | ||
| # Remove 'Pyramidal' keyword |
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| import base64 | ||
| import zipfile | ||
| import numpy as np | ||
| from copy import deepcopy | ||
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| cell_parameters_dict = { |
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A suggestion for a future PR... Changing these to dictionaries with index at the keys and the tuples as the values would help with configuring and debugging the parameter mappings in the update_*_cell_params functions assuming there is a 1:1 order mapping of widgets to these lists.
kmilo9999
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Amazing job @kmilo9999! |
This is the work for the cell params feature for L2 and L5 pyramidal cell types
