Platform beta release #298

drizzentic · 2024-05-15T14:34:16Z

Summary by CodeRabbit

New Features
- Added fhir-ig-importer and reprocess-mediator profiles for enhanced functionality.
- Introduced new network configurations for various services to improve connectivity and organization.
Bug Fixes
- Updated port mappings and URLs for fhir-ig-importer and reprocess-mediator services to resolve conflicts and improve access.
Improvements
- Updated versioning for multiple services to ensure compatibility and leverage new features.
- Enhanced transformation logic in JSON configurations for better data handling.
- Streamlined Docker Compose files for better network management and service isolation.
Chores
- Updated base image versions in Dockerfiles for consistency and security updates.

rcrichton · 2024-05-15T14:34:20Z

Task linked: CU-86bxx8wt8 Platform release beta

coderabbitai · 2024-05-15T14:34:23Z

Walkthrough

This update introduces significant enhancements across various components, including adding new networks and services, updating version numbers, and modifying port configurations. Key changes involve integrating new profiles, updating Docker Compose files for multiple services, and refining JSON configurations. These modifications aim to improve network configurations, version management, and overall system interoperability.

Changes

File(s)	Change Summary
`config.yaml`	Added `fhir-ig-importer` and `reprocess-mediator` to the `profiles` list.
`fhir-ig-importer/docker-compose.dev.yml`, `reprocess-mediator/docker-compose.dev.yml`	Updated port mappings for services.
`fhir-ig-importer/importer/volume/ig-importer-app.json`	Updated URL configuration for the microfrontend app.
`fhir-ig-importer/package-metadata.json`, `interoperability-layer-openhim/package-metadata.json`, `kafka-mapper-consumer/package-metadata.json`, `reprocess-mediator/package-metadata.json`, `mpi-mediator/package-metadata.json`	Updated version numbers for various services.
`fhir-ig-importer/docker-compose.yml`, `fhir-ig-importer/importer/docker-compose.config.yml`, `kafka-mapper-consumer/docker-compose.config.yml`, `kafka-mapper-consumer/docker-compose.yml`	Added new network configurations.
`mpi-mediator/docker-compose.yml`	Updated to use a dynamic version for the `jembi/mpi-mediator` image.
`mpi-mediator/importer/volume/openhim-import.json`	Simplified array syntax, adjusted priority values, and streamlined role assignments.
`client-registry-jempi/importer/mapping-mediator/searchAll.json`	Modified transformation in the `inputTransforms` section.
`test/cucumber/features/steps/recipesSteps.js`	Added new constants and functions for Kafka-related services.
`test/cucumber/features/single-mode/kafka-packages.feature`	Updated parameters for initializing and destroying Kafka-related services.
`Dockerfile`	Updated base image version.
`client-registry-jempi/.../docker-compose.*.yml`	Added new service and network configurations across multiple Docker Compose files.
`client-registry-jempi/swarm.sh`	Enabled specific configurations for clustered mode.

In code's embrace, new networks bloom,
Ports shift and services find their room.
Versions rise, configs refine,
A dance of bytes in perfect line.
With every change, we weave a tale,
Of systems strong, that never fail.
🐇✨

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Actionable comments posted: 2

Review Details

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Commits

Files that changed from the base of the PR and between 67e1a49 and 9a7dbe4.

Files selected for processing (10)

config.yaml (2 hunks)
fhir-ig-importer/docker-compose.dev.yml (1 hunks)
fhir-ig-importer/importer/volume/ig-importer-app.json (1 hunks)
fhir-ig-importer/package-metadata.json (1 hunks)
interoperability-layer-openhim/package-metadata.json (1 hunks)
kafka-mapper-consumer/package-metadata.json (1 hunks)
mpi-mediator/docker-compose.yml (1 hunks)
mpi-mediator/importer/volume/openhim-import.json (6 hunks)
reprocess-mediator/package-metadata.json (1 hunks)
test/cucumber/features/steps/recipesSteps.js (3 hunks)

Files skipped from review due to trivial changes (7)

fhir-ig-importer/docker-compose.dev.yml
fhir-ig-importer/importer/volume/ig-importer-app.json
fhir-ig-importer/package-metadata.json
interoperability-layer-openhim/package-metadata.json
kafka-mapper-consumer/package-metadata.json
mpi-mediator/docker-compose.yml
reprocess-mediator/package-metadata.json

Additional comments not posted (7)

config.yaml (1)

47-48: Ensure that the fhir-ig-importer and reprocess-mediator profiles are correctly integrated and that all necessary configurations and dependencies are in place.

test/cucumber/features/steps/recipesSteps.js (2)

5-7: The new imports for path and ClickHouse are appropriate and necessary for the added functionality.

11-12: The new constants for HOST, CLICKHOUSE_PORT, and CLICKHOUSE_DEBUG are well-defined and follow best practices for environment variable usage.

mpi-mediator/importer/volume/openhim-import.json (4)

8-8: The update to include "admin" in the user groups is appropriate for the user configuration.

22-22: The update to include "instant" in the client roles is appropriate for the client configuration.

97-97: Ensure that the updated priority values and allowed roles are correctly integrated and do not conflict with other configurations.

Also applies to: 154-154, 235-235

323-323: The update to include "instant" in the allowed roles for the mediator configuration is appropriate.

test/cucumber/features/steps/recipesSteps.js

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Files that changed from the base of the PR and between 9a7dbe4 and 39c73c9.

Files selected for processing (1)

test/cucumber/features/steps/recipesSteps.js (3 hunks)

Files skipped from review as they are similar to previous changes (1)

test/cucumber/features/steps/recipesSteps.js

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Commits

Files that changed from the base of the PR and between 39c73c9 and e0d2d5a.

Files selected for processing (11)

config.yaml (2 hunks)
fhir-ig-importer/docker-compose.dev.yml (1 hunks)
fhir-ig-importer/importer/volume/ig-importer-app.json (1 hunks)
fhir-ig-importer/package-metadata.json (1 hunks)
interoperability-layer-openhim/package-metadata.json (1 hunks)
kafka-mapper-consumer/package-metadata.json (1 hunks)
mpi-mediator/docker-compose.yml (1 hunks)
mpi-mediator/importer/volume/openhim-import.json (6 hunks)
reprocess-mediator/docker-compose.dev.yml (1 hunks)
reprocess-mediator/package-metadata.json (1 hunks)
test/cucumber/features/steps/recipesSteps.js (3 hunks)

Files skipped from review due to trivial changes (1)

reprocess-mediator/docker-compose.dev.yml

Files skipped from review as they are similar to previous changes (10)

config.yaml
fhir-ig-importer/docker-compose.dev.yml
fhir-ig-importer/importer/volume/ig-importer-app.json
fhir-ig-importer/package-metadata.json
interoperability-layer-openhim/package-metadata.json
kafka-mapper-consumer/package-metadata.json
mpi-mediator/docker-compose.yml
mpi-mediator/importer/volume/openhim-import.json
reprocess-mediator/package-metadata.json
test/cucumber/features/steps/recipesSteps.js

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Commits

Files that changed from the base of the PR and between e0d2d5a and 4da745e.

Files selected for processing (4)

fhir-ig-importer/docker-compose.yml (2 hunks)
fhir-ig-importer/importer/docker-compose.config.yml (1 hunks)
kafka-mapper-consumer/docker-compose.config.yml (1 hunks)
kafka-mapper-consumer/docker-compose.yml (2 hunks)

Files skipped from review due to trivial changes (4)

fhir-ig-importer/docker-compose.yml
fhir-ig-importer/importer/docker-compose.config.yml
kafka-mapper-consumer/docker-compose.config.yml
kafka-mapper-consumer/docker-compose.yml

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Files that changed from the base of the PR and between a9687fd and 29ec530.

Files selected for processing (1)

test/cucumber/features/single-mode/kafka-packages.feature (3 hunks)

Additional comments not posted (2)

test/cucumber/features/single-mode/kafka-packages.feature (2)
21-25: Ensure the networks clickhouse_public, kafka_public, and openhim_public are correctly configured and exist in the environment.

Verification successful

The networks clickhouse_public, kafka_public, and openhim_public are correctly configured and exist in the environment, as evidenced by their definitions in multiple docker-compose.yml files and references in feature files.

clickhouse_public found in:

mpi-mediator/docker-compose.yml

kafka-mapper-consumer/docker-compose.yml

dashboard-visualiser-superset/docker-compose.yml

analytics-datastore-clickhouse/docker-compose.yml

analytics-datastore-clickhouse/docker-compose.cluster.yml

kafka_public found in:

openhim-mapping-mediator/docker-compose.yml

message-bus-kafka/docker-compose.kafka-utils.yml

message-bus-helper-hapi-proxy/docker-compose.yml

message-bus-kafka/docker-compose.kafka.yml

kafka-unbundler-consumer/docker-compose.yml

kafka-mapper-consumer/docker-compose.yml

interoperability-layer-openhim/docker-compose.yml

data-mapper-logstash/docker-compose.yml

client-registry-jempi/importer/docker-compose.config.yml

client-registry-jempi/docker-compose.combined.yml

client-registry-jempi/docker-compose.api.yml

openhim_public found in:

reprocess-mediator/docker-compose.yml

openhim-mapping-mediator/docker-compose.yml

mpi-mediator/docker-compose.yml

mpi-mediator/importer/docker-compose.config.yml

message-bus-helper-hapi-proxy/docker-compose.yml

kafka-mapper-consumer/docker-compose.yml

kafka-mapper-consumer/docker-compose.config.yml

interoperability-layer-openhim/docker-compose.yml

fhir-ig-importer/docker-compose.yml

fhir-ig-importer/importer/docker-compose.config.yml

client-registry-jempi/importer/openhim/docker-compose.config.yml
Scripts Executed

The following scripts were executed for the analysis:

Script:
#!/bin/bash
# Description: Verify the existence and configuration of the specified networks.

# Test: List Docker networks and check for the specified networks.
docker network ls | grep -E 'clickhouse_public|kafka_public|openhim_public'
Length of output: 151

Script:
#!/bin/bash
# Description: Search for the network names in the codebase to verify their existence and configuration.

# Search for 'clickhouse_public' network definition
rg 'clickhouse_public'

# Search for 'kafka_public' network definition
rg 'kafka_public'

# Search for 'openhim_public' network definition
rg 'openhim_public'
Length of output: 9140
Line range hint 35-46: Ensure the networks kafka_public, clickhouse_public, prometheus_public, and openhim_public are correctly configured and exist in the environment.

Verification successful

Networks kafka_public, clickhouse_public, prometheus_public, and openhim_public are configured in the codebase

The search results confirm that the networks kafka_public, clickhouse_public, prometheus_public, and openhim_public are indeed configured in various docker-compose files and feature files within the codebase.

kafka_public is found in multiple docker-compose files and feature files.

clickhouse_public is found in docker-compose files and feature files.

prometheus_public is found in docker-compose files and feature files.

openhim_public is found in docker-compose files and feature files.

These configurations indicate that the networks are set up and referenced correctly in the environment.
Scripts Executed

The following scripts were executed for the analysis:

Script:
#!/bin/bash
# Description: Verify the existence and configuration of the specified networks.

# Test: List Docker networks and check for the specified networks.
docker network ls | grep -E 'kafka_public|clickhouse_public|prometheus_public|openhim_public'
Length of output: 169

Script:
#!/bin/bash
# Description: Search for the specified network names in the codebase to verify their configuration.

# Search for network names in the codebase
rg 'kafka_public|clickhouse_public|prometheus_public|openhim_public'
Length of output: 9064

rcrichton · 2024-05-16T13:16:11Z

@drizzentic this was from a previous change but I think we should leave the config file pointing to jembi/platform:latest, instead of:

https://github.com/jembi/platform/pull/298/files#diff-d8d0422389f03d783e32e627250fe29834bd09c6361640d1ff00661dd6820034L2

As this file will get changed by the CI action and uploaded as part of the release, see:

platform/.github/workflows/main.yaml

Line 17 in d6efe12

sed -i "s/latest/${{ github.event.release.tag_name }}/g" config.yaml

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Commits

Files that changed from the base of the PR and between 29ec530 and fa9ad5b.

Files selected for processing (1)

Dockerfile (1 hunks)

Files skipped from review due to trivial changes (1)

Dockerfile

This also adds bootstrapper node placement. Has to be on the leader where the commands are run as we run a command in the bootstrapper docker container

…/platform into CU-86bxx8wt8_Platform-release-beta

coderabbitai

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Commits

Files that changed from the base of the PR and between fa9ad5b and 5be40a2.

Files selected for processing (7)

client-registry-jempi/docker-compose.api.yml (3 hunks)
client-registry-jempi/docker-compose.combined-cluster.yml (3 hunks)
client-registry-jempi/docker-compose.combined.yml (7 hunks)
client-registry-jempi/docker-compose.dgraph-zero-cluster.yml (3 hunks)
client-registry-jempi/docker-compose.dgraph-zero.yml (1 hunks)
client-registry-jempi/docker-compose.dgraph.yml (4 hunks)
client-registry-jempi/swarm.sh (1 hunks)

Additional comments not posted (7)

client-registry-jempi/docker-compose.dgraph-zero.yml (1)

18-19: Network configuration for jempi added correctly.

Also applies to: 24-27

client-registry-jempi/docker-compose.dgraph-zero-cluster.yml (1)

10-12: Network configuration for jempi added correctly across all Dgraph Zero cluster nodes.

Also applies to: 30-31, 50-51, 58-60

client-registry-jempi/docker-compose.dgraph.yml (1)

19-20: Network configuration for jempi added correctly across all Dgraph Alpha instances and the Ratel UI.

Also applies to: 37-38, 55-56, 70-71, 79-81

client-registry-jempi/docker-compose.combined-cluster.yml (1)

45-46: Network configuration for jempi added correctly across all PostgreSQL instances and the bootstrapper.

Also applies to: 77-78, 85-87

client-registry-jempi/docker-compose.api.yml (1)

36-36: Network configuration for jempi added correctly across both API and API-KC instances.

Also applies to: 81-81, 92-94

client-registry-jempi/swarm.sh (1)

55-59: Handling of clustered mode added correctly to the script.

client-registry-jempi/docker-compose.combined.yml (1)

22-22: Network configuration for jempi added correctly across all services in the combined configuration.

Also applies to: 41-41, 75-75, 110-110, 131-131, 160-160, 172-174

coderabbitai

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Files that changed from the base of the PR and between 5be40a2 and 1cac0f7.

Files selected for processing (2)

config.yaml (3 hunks)
interoperability-layer-openhim/docker-compose.yml (1 hunks)

Files skipped from review due to trivial changes (1)

interoperability-layer-openhim/docker-compose.yml

Files skipped from review as they are similar to previous changes (1)

config.yaml

coderabbitai

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Commits

Files that changed from the base of the PR and between 1cac0f7 and 370bd14.

Files selected for processing (2)

mpi-mediator/docker-compose.yml (1 hunks)
mpi-mediator/package-metadata.json (1 hunks)

Files skipped from review due to trivial changes (1)

mpi-mediator/package-metadata.json

Files skipped from review as they are similar to previous changes (1)

mpi-mediator/docker-compose.yml

brett-onions

Looks good to me

drizzentic requested a review from bradsawadye May 15, 2024 14:34

drizzentic force-pushed the CU-86bxx8wt8_Platform-release-beta branch 2 times, most recently from 4c8a089 to 9a7dbe4 Compare May 15, 2024 15:38

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drizzentic deleted the CU-86bxx8wt8_Platform-release-beta branch May 15, 2024 15:54

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Platform beta release

e0d2d5a

drizzentic force-pushed the CU-86bxx8wt8_Platform-release-beta branch from 39c73c9 to e0d2d5a Compare May 15, 2024 18:21

drizzentic marked this pull request as draft May 15, 2024 18:21

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drizzentic marked this pull request as draft May 16, 2024 03:34

Fix failing tests

4da745e

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Fix kafka consumer failing test

29ec530

drizzentic marked this pull request as draft May 16, 2024 07:57

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Bump instant version to latest

fa9ad5b

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bradsawadye added 2 commits May 17, 2024 11:42

Add jempi network for the services to communicate

56abcb3

This also adds bootstrapper node placement. Has to be on the leader where the commands are run as we run a command in the bootstrapper docker container

Merge branch 'CU-86bxx8wt8_Platform-release-beta' of github.com:jembi…

5be40a2

…/platform into CU-86bxx8wt8_Platform-release-beta

bradsawadye marked this pull request as draft May 17, 2024 09:47

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fix version and disable cert verification in console.

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drizzentic marked this pull request as draft May 20, 2024 06:32

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drizzentic requested review from rcrichton, BMartinos and brett-onions May 20, 2024 08:10

Update version for mpi mediator

370bd14

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bradsawadye merged commit 679e2b6 into main May 21, 2024
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Cu 86bzf9c4p update platform je mpi images #324

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Add the openfn package to platform. Also fixed CU-86bzwyh69 #322

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Platform beta release #298

Platform beta release #298

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Networks `kafka_public`, `clickhouse_public`, `prometheus_public`, and `openhim_public` are configured in the codebase

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Platform beta release #298

Platform beta release #298

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Networks kafka_public, clickhouse_public, prometheus_public, and openhim_public are configured in the codebase

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Networks `kafka_public`, `clickhouse_public`, `prometheus_public`, and `openhim_public` are configured in the codebase

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