v0.6.6

New Features

• Removed ref_group reordering in column splits so not to change the order.
• Added bold argument to as_html to bold specified elements, and header_sep_line
  argument to print a horizontal line under the table header in rendered HTML output.
• Duplicate referential footnotes are consolidated when tables are rendered.
• Section divisors can be set for analysis rows.
• Added setter and getter for section dividers (section_div and section_div<-). They also accept
  split section structure assignment.
• Added header_section_div setters and getters for layout and table objects along with
  related basic_table parameter.
• Added na_str argument to analyze_colvars to set custom string to print in place of missing values.
• Added flat data.frame outputs for as_result_df() via flag parameters as_viewer, as_strings, and
  expand_colnames.
• Migrated export_as_pdf function to formatters.

Bug Fixes

• Fixed a bug that was failing when wrapping and section dividers were used at the same time.
• Fixed a bug in as_result_df causing misalignment of column names.
• Fixed a bug that was not allowing path indexing as row_paths() was giving a different path due to it being made of
  named values.
• Fixed a bug in as_result_df when called on tables with less than 3 rows.

Miscellaneous

• Applied styler and resolved package lint. Changed default indentation from 4 spaces to 2.
• Added Developer Guide to pkgdown site with Debugging, Split Machinery, and Tabulation sections.
• Whitespace is not trimmed when rendering tables with as_html.
• Started deprecation cycle for col_fnotes_here to be replaced with col_footnotes.
• Exported section_div methods now have a dedicated documentation page that is visible to users.
• When tables are exported as txt, they preserve the horizontal separator of the table.
• Added imports on stringi and checkmate as they are fundamental packages for string handling and
  argument checking.
• Updated introduction vignette and split it into two. Section on introspecting tables is now located in a separate vignette.

What's Changed

• Update logo by @edelarua in #756
• Remove old references by @cicdguy in #757
• Apply styler, fix lint by @edelarua in #760
• moving training slides to repo subdir by @ayogasekaram in #764
• update ref_group column ordering by @clarkliming in #748
• Split Machinery and Tabulation - Dev Guide by @Melkiades in #614
• Add developer guide to pkgdown site by @edelarua in #744
• Render the dev-guide as part of pkgdown by @cicdguy in #771
• Add favicon to pkgdown site by @edelarua in #770
• Fix bug when footnote path contains named elements by @edelarua in #772
• Keep whitespace in html tables by @edelarua in #777
• Align table html output with ASCII output by @edelarua in #780
• Combine duplicate ref footnotes by @edelarua in #781
• 761 better getter seeters@221 fix separator div@main by @Melkiades in #782
• hsep propagation fix by @Melkiades in #789
• Add na_str argument to analyze_colvars by @edelarua in #791
• Fix column name misalignment bug in as_result_df by @edelarua in #792
• Direct formatted output from as_result_df by @Melkiades in #793
• Fix potential tt at path issue by @clarkliming in #794
• avoid pipe and dot; add note blocklist by @pawelru in #797
• Add CONTRIBUTING.md file by @edelarua in #799
• migrate export_as_pdf by @ayogasekaram in #798
• Fix as_result_df bug for small tables by @edelarua in #801
• Update introduction vignette by @anajens in #716
• class hierarchy document by @ayogasekaram in #637
• init update for cran release prep 0.6.6, [skip vbump] by @shajoezhu in #804

New Contributors

• @clarkliming made their first contribution in #748

Full Changelog: v0.6.5...v0.6.6