init update for cran release prep 0.6.6, [skip vbump] (#804)

* init update for cran release prep 0.6.6, [skip vbump] * update pdf url * Update .Rbuildignore Co-authored-by: Emily de la Rua <[email protected]> Signed-off-by: Joe Zhu <[email protected]> * update doc, remove braces * take out pdf from the build --------- Signed-off-by: Joe Zhu <[email protected]> Co-authored-by: Emily de la Rua <[email protected]>
insightsengineering · Dec 8, 2023 · f4c7da7 · f4c7da7
1 parent a062af1
commit f4c7da7
Show file tree

Hide file tree

Showing 7 changed files with 32 additions and 20 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -28,3 +28,8 @@
 ^temp$
 ~$
 ^vignettes/dev-guide$
+pkgdown
+inst/extdata/Advanced_rtables_part1.pdf
+inst/extdata/Advances_rtables_part2.pdf
+inst/extdata/Clinical_Trial_Reporting_Tables_in_R.pdf
+inst/extdata/r_adoption_slides.pdf
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: rtables
 Title: Reporting Tables
-Version: 0.6.5.9025
+Version: 0.6.6
 Date: 2023-12-07
 Authors@R: c(
     person("Gabriel", "Becker", , "[email protected]", role = "aut",
@@ -29,7 +29,7 @@ URL: https://github.com/insightsengineering/rtables,
     https://insightsengineering.github.io/rtables/
 BugReports: https://github.com/insightsengineering/rtables/issues
 Depends:
-    formatters (>= 0.5.4.9008),
+    formatters (>= 0.5.5),
     magrittr (>= 1.5),
     methods,
     R (>= 2.10)

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,4 @@
-## rtables 0.6.5.9025
+## rtables 0.6.6
 ### New Features
  * Removed `ref_group` reordering in column splits so not to change the order.
  * Added `bold` argument to `as_html` to bold specified elements, and `header_sep_line` 

diff --git a/R/colby_constructors.R b/R/colby_constructors.R
@@ -1935,7 +1935,7 @@ manual_cols <- function(..., .lst = list(...)) {
 #'   We provide both because when using the functions as tabulation in
 #'   \code{\link{analyze}}, functions which take \code{df} as their first
 #'   argument are passed the full subset dataframe, while those which accept
-#'   anything else {notably including \code{x}} are passed only the relevant
+#'   anything else notably including \code{x} are passed only the relevant
 #'   subset of the variable being analyzed.
 #'
 #' @rdname list_wrap

diff --git a/README.Rmd b/README.Rmd
@@ -121,10 +121,10 @@ library(dplyr)
 ADSL <- ex_adsl %>% filter(RACE %in% levels(RACE)[1:3])
 
 biomarker_ave <- function(x, ...) {
-  val <- if (length(x) > 0) round(mean(x), 2) else "no data"
-  in_rows(
-    "Biomarker 1 (mean)" = rcell(val)
-  )
+     val <- if(length(x) > 0) round(mean(x), 2) else "no data"
+     in_rows(
+        "Biomarker 1 (mean)" = rcell(val)
+     )
 }
 
 basic_table(show_colcounts = TRUE) %>%
@@ -145,18 +145,25 @@ We would like to thank everyone who has made `rtables` a better project by provi
 Maximo Carreras, Francois Collins, Saibah Chohan, Tadeusz Lewandowski, Nick Paszty, Nina Qi, Jana Stoilova, Heng Wang, Godwin Yung
 
 ## Presentations
+
 ### Advanced rtables Training
-* Part 1 [Slides](https://docs.google.com/presentation/d/1ygQE9UaoXY6C_FiQLkiYtXB_OnkVbXvsMIY6_MQPbx0/edit?usp=sharing)
-* Part 2 - Forthcoming
 
-### RinPharma Workshop: Creating Submission-Quality Clinical Trial Reporting Tables in R with rtables 
-* [Slides](https://docs.google.com/presentation/d/1t0098eh1b8_FaFfRoD7jhP1nxhLmjrJeD5X5MkmKC48)
+- Part 1
+  [Slides](https://github.com/insightsengineering/rtables/blob/main/inst/extdata/Advanced_rtables_part1.pdf)
+- Part 2
+  [Slides](https://github.com/insightsengineering/rtables/blob/main/inst/extdata/Advances_rtables_part2.pdf)
+
+### RinPharma Workshop: Creating Submission-Quality Clinical Trial Reporting Tables in R with rtables
+
+- [Slides](https://github.com/insightsengineering/rtables/blob/main/inst/extdata/Clinical_Trial_Reporting_Tables_in_R.pdf)
 
 ### R Adoption Series
 
-* [R Adoption Series presentation 2022](https://www.youtube.com/watch?v=1i6vOId2h4A)
-* Slides: https://github.com/gmbecker/rtables_radoption_webinar (index.html)
+- [R Adoption Series presentation
+  2022](https://www.youtube.com/watch?v=1i6vOId2h4A)
+- [Slides](https://github.com/insightsengineering/rtables/blob/main/inst/extdata/r_adoption_slides.pdf)
 
 ### New (Current) Layouting and Tabulation Framework (v.0.3+)
 
-* [useR!2020 Presentation (on v0.3.1.1) July 2020](https://www.youtube.com/watch?v=CBQzZ8ZhXLA)
+- [useR!2020 Presentation (on v0.3.1.1) July
+  2020](https://www.youtube.com/watch?v=CBQzZ8ZhXLA)
diff --git a/README.md b/README.md
@@ -204,19 +204,19 @@ Nick Paszty, Nina Qi, Jana Stoilova, Heng Wang, Godwin Yung
 ### Advanced rtables Training
 
 - Part 1
-  [Slides](inst/extdata/Advanced_rtables_part1.pdf)
+  [Slides](https://github.com/insightsengineering/rtables/blob/main/inst/extdata/Advanced_rtables_part1.pdf)
 - Part 2 
-  [Slides](inst/extdata/Advanced_rtables_part2.pdf)
+  [Slides](https://github.com/insightsengineering/rtables/blob/main/inst/extdata/Advances_rtables_part2.pdf)
 
 ### RinPharma Workshop: Creating Submission-Quality Clinical Trial Reporting Tables in R with rtables
 
-- [Slides](inst/extdata/Clinical_Trial_Reporting_Tables_in_R.pdf)
+- [Slides](https://github.com/insightsengineering/rtables/blob/main/inst/extdata/Clinical_Trial_Reporting_Tables_in_R.pdf)
 
 ### R Adoption Series
 
 - [R Adoption Series presentation
   2022](https://www.youtube.com/watch?v=1i6vOId2h4A)
-- [Slides](inst/extdata/r_adoption_slides.pdf)
+- [Slides](https://github.com/insightsengineering/rtables/blob/main/inst/extdata/r_adoption_slides.pdf)
 
 ### New (Current) Layouting and Tabulation Framework (v.0.3+)
 

diff --git a/man/list_wrap.Rd b/man/list_wrap.Rd