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Split Machinery and Tabulation - Dev Guide #614

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merged 51 commits into from
Nov 1, 2023
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Melkiades
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Fixes #568

fyi @ayogasekaram. We can meet anytime to exchange opinions and ideas on structure and content

This was referenced Sep 18, 2023
@shajoezhu shajoezhu mentioned this pull request Oct 13, 2023
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@edelarua edelarua mentioned this pull request Oct 13, 2023
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@Melkiades Melkiades marked this pull request as ready for review October 26, 2023 13:55

## Disclaimer

Any code or prose which appears in a version of this vignette on the `main` branch of the repository may reflect a specific state of things that can be more or less recent. This guide reflects very important pieces of the split machinery that are unlikely to change. We anyway invite the reader to think always that the current code may have drifted from the following document, and it is always the best practice to read directly the code on `main`. (xxx we should insert it automatically)
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I think we should insert this automatically. @edelarua @ayogasekaram you remember how best to add this from a common source?

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I think the way we did this previously (in tern?) only worked for Roxygen documentation, i.e. creating a doc with the blurb and reusing it with a few words changed in multiple places.

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github-actions bot commented Oct 26, 2023

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Code Coverage Summary

Filename                     Stmts    Miss  Cover    Missing
-------------------------  -------  ------  -------  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R/00tabletrees.R               737      62  91.59%   22, 103, 106, 413, 497-498, 501, 656, 756, 847-848, 949, 951-952, 975-978, 1000, 1113-1116, 1211-1216, 1363, 1458-1461, 1524-1527, 1562-1565, 1571-1576, 1625, 1632, 1730, 1840, 1854, 1857-1860, 1863-1866, 1894, 1925-1926
R/as_html.R                    138       6  95.65%   66, 133-137
R/colby_constructors.R         555      20  96.40%   71, 123, 181-184, 244-247, 387, 404, 1213, 1304, 1465, 1503, 1525, 1549, 1570, 1726
R/compare_rtables.R             83      17  79.52%   93-96, 99-102, 115-118, 137, 157-158, 189, 194
R/format_rcell.R                12       0  100.00%
R/indent.R                      13       2  84.62%   39-40
R/index_footnotes.R             62       0  100.00%
R/make_split_fun.R             119      23  80.67%   22-25, 51-54, 57-60, 115, 119, 280, 283-286, 291-294, 313, 412
R/make_subset_expr.R           136      14  89.71%   34-48, 126-133, 168, 250, 266, 274
R/simple_analysis.R              5       1  80.00%   55
R/split_funs.R                 505      66  86.93%   143, 148, 154-159, 164, 181-185, 366-371, 388-393, 474, 526, 544-547, 564, 631, 641-642, 644, 658, 702, 727, 903, 910, 936-939, 950-951, 953, 955, 1126-1128, 1142-1146, 1210-1213, 1276-1279
R/summary.R                    215      24  88.84%   38, 85, 192, 200, 271-276, 287-288, 307-308, 418, 465-481, 516, 549
R/tree_accessors.R             833      79  90.52%   109, 251, 269, 292, 330, 344, 360, 465, 492-493, 774-779, 907, 925, 949, 999, 1054-1055, 1094, 1127, 1163-1167, 1220, 1295-1299, 1317-1327, 1396, 1501-1504, 1529, 1549-1550, 1559, 1600, 1618-1622, 1643-1647, 1726, 1768, 1872, 1976, 1989, 2002, 2016, 2024, 2033-2037, 2379, 2737, 2850, 2944-2951, 3111, 3229, 3255-3289, 3305-3312
R/tt_afun_utils.R              411      32  92.21%   50, 164, 171, 181-194, 260, 271-272, 504, 512-515, 597-601, 622, 637-639
R/tt_compare_tables.R           70       4  94.29%   56, 178, 257, 261
R/tt_compatibility.R           510      56  89.02%   19, 142-143, 192, 197, 332-333, 337-340, 346, 350, 398, 520, 568, 601, 621, 654-657, 701, 718-722, 809, 837-840, 849, 912, 920, 931-934, 1044, 1051, 1080-1094, 1125-1126
R/tt_dotabulation.R           1116      96  91.40%   54, 252, 257, 259, 310, 334, 338-341, 373-376, 399, 434-437, 465-468, 564, 702-706, 757, 761, 790-793, 803, 823-827, 834-837, 1093, 1097, 1129, 1242-1245, 1439-1447, 1588, 1672-1681, 1761-1764, 1775, 1780, 1785-1786, 1788, 1799, 1804, 1827, 1922-1941
R/tt_export.R                  472      44  90.68%   48, 65, 105-109, 142, 181-185, 249-262, 365-368, 383, 711, 720, 745-749, 916-919, 922, 953, 959
R/tt_from_df.R                   9       0  100.00%
R/tt_paginate.R                436      37  91.51%   48, 73, 110-118, 393, 515-518, 538-542, 692-695, 745-752, 821, 824, 834, 841, 844
R/tt_pos_and_access.R          571      43  92.47%   77, 79-81, 106, 166, 212-216, 262, 514, 516, 524, 530, 544, 554-557, 739, 750-754, 759-762, 789, 842-843, 855, 1021-1022, 1080-1108, 1388, 1465
R/tt_showmethods.R             144      21  85.42%   60, 97-120, 183, 209, 218, 226, 229-233, 326-327
R/tt_sort.R                     88       5  94.32%   223-226, 234
R/tt_toString.R                394      25  93.65%   118, 309, 357, 372, 382, 389, 392, 398-408, 497, 562, 568, 803-829
R/utils.R                       23       0  100.00%
R/validate_table_struct.R       84      12  85.71%   79-83, 92-93, 140, 150-151, 204-205
R/Viewer.R                      61       9  85.25%   51, 55, 65-69, 89, 123
TOTAL                         7802     698  91.05%

Diff against main

Filename                     Stmts    Miss  Cover
-------------------------  -------  ------  --------
R/00tabletrees.R              +113     +21  -1.84%
R/as_html.R                    +50      -1  +3.61%
R/colby_constructors.R         +73      +3  -0.08%
R/compare_rtables.R             +5      +6  -6.38%
R/index_footnotes.R            +12       0  +100.00%
R/make_split_fun.R            +119     +23  +80.67%
R/make_subset_expr.R           +30      +2  +1.03%
R/split_funs.R                 +84     +11  -0.01%
R/summary.R                    +32      +8  -2.42%
R/tree_accessors.R             +40     +11  -0.91%
R/tt_afun_utils.R              +66      +7  -0.54%
R/tt_compare_tables.R           +5       0  +0.44%
R/tt_compatibility.R           +97      +6  +1.13%
R/tt_dotabulation.R           +379     +52  -2.63%
R/tt_export.R                 +243     -29  +22.56%
R/tt_paginate.R                +53     +22  -4.57%
R/tt_pos_and_access.R          +51      +6  -0.42%
R/tt_showmethods.R             +23       0  +2.77%
R/tt_sort.R                     +7      -1  +1.73%
R/tt_toString.R                +89      +3  +0.87%
R/utils.R                      +12      -1  +9.09%
R/validate_table_struct.R      +84     +12  +85.71%
R/Viewer.R                      +5       0  +1.32%
TOTAL                        +1672    +161  -0.19%

Results for commit: b364d87

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

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github-actions bot commented Oct 26, 2023

Unit Tests Summary

       1 files       24 suites   2m 2s ⏱️
   186 tests    186 ✔️ 0 💤 0
1 410 runs  1 410 ✔️ 0 💤 0

Results for commit b364d87.

♻️ This comment has been updated with latest results.

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Hi @Melkiades,

The dev guide sections look great! I made a few grammar/wording edits but nothing big and it was very easy to understand. I also applied the styler to the code blocks but didn't actually change any of the code. There's a few sections with "xxx" which I assume you will still want to edit, plus we will need to add some links in (probably better to do in one of the following PRs after publishing to the pkgdown site), but I think it's fine for now especially since we have the disclaimer.

Amazing work as always!! :)


```{r, eval=FALSE}
# rtables 6.0.2
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ops... we should get to 1.0.0 at some time :D

@Melkiades Melkiades merged commit 90da366 into main Nov 1, 2023
17 checks passed
@Melkiades Melkiades deleted the 568_dev_guide_split@main branch November 1, 2023 14:41
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Outline Dev Guide Section - Tabulation Outline Dev Guide Section - Split machinery
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