Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

setup-r-deps: replace github-token param with GITHUB_PAT env var #262

Merged
merged 3 commits into from
Nov 7, 2024
Merged

setup-r-deps: replace github-token param with GITHUB_PAT env var #262

Show file tree
Hide file tree
Changes from 1 commit
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
fc68ca4
setup-r-deps: replace `github-token` param with `GITHUB_PAT` env var
pawelru Nov 7, 2024
9434b53
Apply suggestions from code review
pawelru Nov 7, 2024
e376bcd
Merge branch 'main' into setup_r_deps_gh_pat
pawelru Nov 7, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 3 additions & 2 deletions .github/workflows/bioccheck.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -158,10 +158,11 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: insightsengineering/setup-r-dependencies@rm_param_github_token
pawelru marked this conversation as resolved.
Show resolved Hide resolved
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
lookup-refs: ${{ inputs.lookup-refs }}
github-token: ${{ steps.github-token.outputs.token }}
repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}

- name: Run BiocCheck ☣️
Expand Down
5 changes: 3 additions & 2 deletions .github/workflows/build-check-install.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -436,10 +436,11 @@ jobs:
if: >-
env.deps_installation_method == 'setup-r-dependencies'
&& inputs.install-deps-from-package-repositories == ''
uses: insightsengineering/setup-r-dependencies@v1
uses: insightsengineering/setup-r-dependencies@rm_param_github_token
pawelru marked this conversation as resolved.
Show resolved Hide resolved
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
lookup-refs: ${{ inputs.lookup-refs }}
github-token: ${{ steps.github-token.outputs.token }}
repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}
skip-desc-branch: ${{ inputs.skip-desc-branch }}
skip-desc-dev: ${{ inputs.skip-desc-dev }}
Expand Down
5 changes: 3 additions & 2 deletions .github/workflows/pkgdown.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -230,10 +230,11 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: insightsengineering/setup-r-dependencies@rm_param_github_token
pawelru marked this conversation as resolved.
Show resolved Hide resolved
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
lookup-refs: ${{ inputs.lookup-refs }}
github-token: ${{ steps.github-token.outputs.token }}
repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}

- name: Install R package 🚧
Expand Down
5 changes: 3 additions & 2 deletions .github/workflows/revdepcheck.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -91,11 +91,12 @@ jobs:
shell: bash

- name: Install dependencies
uses: insightsengineering/setup-r-dependencies@v1
uses: insightsengineering/setup-r-dependencies@rm_param_github_token
pawelru marked this conversation as resolved.
Show resolved Hide resolved
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
lookup-refs: ${{ inputs.lookup-refs }}
skip-desc-branch: true
github-token: ${{ steps.github-token.outputs.token }}

- name: revdepcheck 🔄
id: revdepcheck
Expand Down
10 changes: 6 additions & 4 deletions .github/workflows/rhub.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -96,11 +96,12 @@ jobs:
with:
job-config: ${{ matrix.config.job-config }}

- uses: insightsengineering/setup-r-dependencies@v1
- uses: insightsengineering/setup-r-dependencies@rm_param_github_token
pawelru marked this conversation as resolved.
Show resolved Hide resolved
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
lookup-refs: ${{ inputs.lookup-refs }}
skip-install: true
github-token: ${{ steps.github-token.outputs.token }}
restore-description: false
install-quarto: "false"

Expand Down Expand Up @@ -148,11 +149,12 @@ jobs:
with:
job-config: ${{ matrix.config.job-config }}

- uses: insightsengineering/setup-r-dependencies@v1
- uses: insightsengineering/setup-r-dependencies@rm_param_github_token
pawelru marked this conversation as resolved.
Show resolved Hide resolved
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
lookup-refs: ${{ inputs.lookup-refs }}
skip-install: true
github-token: ${{ steps.github-token.outputs.token }}
restore-description: false
install-quarto: "false"

Expand Down
5 changes: 3 additions & 2 deletions .github/workflows/roxygen.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -152,10 +152,11 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
env.deps_installation_method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: insightsengineering/setup-r-dependencies@rm_param_github_token
pawelru marked this conversation as resolved.
Show resolved Hide resolved
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
lookup-refs: ${{ inputs.lookup-refs }}
github-token: ${{ steps.github-token.outputs.token }}
repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}

- name: Generate man pages 📄
Expand Down
5 changes: 3 additions & 2 deletions .github/workflows/test-coverage.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -243,10 +243,11 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: insightsengineering/setup-r-dependencies@rm_param_github_token
pawelru marked this conversation as resolved.
Show resolved Hide resolved
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
lookup-refs: ${{ inputs.lookup-refs }}
github-token: ${{ steps.github-token.outputs.token }}
repository-path: ${{ github.event.repository.name }}/${{ inputs.package-subdirectory }}

- name: Install R package 🚧
Expand Down
5 changes: 3 additions & 2 deletions .github/workflows/validation.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -147,10 +147,11 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: insightsengineering/setup-r-dependencies@rm_param_github_token
pawelru marked this conversation as resolved.
Show resolved Hide resolved
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
lookup-refs: ${{ inputs.lookup-refs }}
github-token: ${{ steps.github-token.outputs.token }}
repository-path: ${{ env.package_subdirectory }}

- name: Build report 🏗
Expand Down
Loading