v0.2.0
insights-engineering-bot
released this
20 Jul 17:41
·
87 commits
to main
since this release
Breaking Changes
- Updated function names to follow the pattern
ard_<pkgname>_<fnname>()
. This change is immediate: previous functions names have not been deprecated. (#106)
ard_ttest() -> ard_stats_t_test()
ard_paired_ttest() -> ard_stats_paired_t_test()
ard_wilcoxtest() -> ard_stats_wilcox_test()
ard_paired_wilcoxtest() -> ard_stats_paired_wilcox_test()
ard_chisqtest() -> ard_stats_chisq_test()
ard_fishertest() -> ard_stats_fisher_test()
ard_kruskaltest() -> ard_stats_kruskal_test()
ard_mcnemartest() -> ard_stats_mcnemar_test()
ard_moodtest() -> ard_stats_mood_test()
New Features
- The
ard_categorical_ci(value)
argument has been added. Previously, only binary variables (0/1 or TRUE/FALSE) could be summarized. When a value is not supplied, each level of the variable is summarized independently. By default, binary variables will have the1
/TRUE
level summarized. - Added the following functions for calculating Analysis Results Datasets (ARDs).
ard_stats_aov()
for calculating ANOVA results usingstats::aov()
. (#3)ard_stats_anova()
for calculating ANOVA results usingstats::anova()
. (#12)ard_stats_mcnemar_test_long()
for McNemar's test from long data usingstats::mcnemar.test()
.ard_stats_prop_test()
for tests of proportions usingstats::prop.test()
. (#64)ard_stats_t_test_onesample()
for calculating one-sample results.ard_stats_wilcox_test_onesample()
for calculating one-sample results.ard_stats_oneway_test()
for calculating ANOVA results usingstats::oneway.test()
. (#3)ard_aod_wald_test()
for calculating Wald Tests for regression models usingaod::wald.test()
. (#84)ard_car_anova()
for calculating ANOVA results usingcar::Anova()
. (#3)ard_car_vif()
for calculating the variance inflation factor usingcar::vif()
. (#10)ard_effectsize_cohens_d()
,ard_effectsize_paired_cohens_d()
,ard_effectsize_hedges_g()
, andard_effectsize_paired_hedges_g()
for standardized differences usingeffectsize::cohens_d()
andeffectsize::hedges_g()
. (#50)ard_emmeans_mean_difference()
for calculating the least-squares mean differences using the {emmeans} package. (#34)ard_smd_smd()
for calculating standardized mean differences usingsmd::smd()
. (#4)ard_survival_survfit()
for survival analyses usingsurvival::survfit()
. (#43)ard_continuous.survey.design()
for calculating univariate summary statistics from weighted/survey data using many functions from the {survey} package. (#68)ard_categorical.survey.design()
for tabulating summary statistics from weighted/survey data using many functions from the {survey} package. (#140)ard_dichotomous.survey.design()
for tabulating dichotomous summary statistics from weighted/survey data using many functions from the {survey} package. (#2)ard_missing.survey.design()
for tabulating missing summary statistics from weighted/survey data using many functions from the {survey} package. (#2)ard_attributes.survey.design()
for summarizing labels and attributes from weighted/survey data using many functions from the {survey} package.ard_survey_svychisq()
for weighted/survey chi-squared test usingsurvey::svychisq()
. (#72)ard_survey_svyttest()
for weighted/survey t-tests usingsurvey::svyttest()
. (#70)ard_survey_svyranktest()
for weighted/survey rank tests usingsurvey::svyranktest()
. (#71)ard_survival_survdiff()
for creating results fromsurvival::survdiff()
. (#113)ard_regression_basic()
for basic regression models. The function focuses on matching model terms to underlying variables names. (#46)
- Updated functions
ard_stats_t_test()
,ard_stats_paired_t_test()
,ard_stats_wilcox_test()
,ard_stats_paired_wilcox_test()
,ard_stats_chisq_test()
,ard_stats_fisher_test()
,ard_stats_kruskal_test()
,ard_stats_mcnemar_test()
, andard_stats_mood_test()
to accept multiple variables at once. Independent tests are calculated for each variable. Thevariable
argument is renamed tovariables
. (#77) - Updated
ard_stats_t_test()
andard_stats_wilcox_test()
to no longer require theby
argument, which yields central estimates with their confidence intervals. (#82) - Added model construction helpers,
construct_model()
,reformulate2()
,bt()
, andbt_strip()
. - Imported cli call environment functions from
https://github.com/ddsjoberg/standalone/blob/main/R/standalone-cli_call_env.R
and implementedset_cli_abort_call
in user-facing functions. (#111)
What's Changed
- Initial setup by @ddsjoberg in #8
- Adding t-test ARDs by @ddsjoberg in #16
- Small pkg prep by @ddsjoberg in #17
- Small pkg prep by @ddsjoberg in #18
- Adding Wilcoxon Rank-Sum Tests by @ddsjoberg in #25
- Adding
ard_chisqtest()
by @ddsjoberg in #22 - adding
ard_fishertest()
by @ddsjoberg in #21 - adding proportion CIs by @ddsjoberg in #9
- Adding
ard_regression()
by @ddsjoberg in #26 - Closes #38 adding Kruskal-Wallis test by @zdz2101 in #45
- {cards} arg rename updates by @ddsjoberg in #53
- Pkgdown workflow test by @ddsjoberg in #55
- McNemar's statistical test addition:
ard_mcnemartest
by @Melkiades in #51 - Closes #52 for moods test by @zdz2101 in #52
- general renaming by @ddsjoberg in #58
- Updating checks file by @ddsjoberg in #60
- Adds ard_regression_basic(). by @rparmm in #62
- Cohen's D and Hedge's G ARD Functions by @ayogasekaram in #57
- Adding
ard_proptest()
by @ddsjoberg in #64 - Adding
ard_smd()
by @ddsjoberg in #65 - Adding
ard_car_anova()
by @ddsjoberg in #67 - Closes #49 add formulas/document the methods of CI interval calculation in LaTeX by @zdz2101 in #63
- Closes #10 add
ard_vif()
by @zdz2101 in #61 - Updated
ard_wilcoxtest()
to allow multiple variables by @ddsjoberg in #81 - update
ard_cohens_d
function to accept multiple variables by @ayogasekaram in #87 - update
ard_hedges_g
andard_paired_hedges_g
by @ayogasekaram in #88 - update
ard_moodtest
function to accept multiple variables by @ayogasekaram in #90 - add
ard_svychisq()
function by @ayogasekaram in #83 - Updated
ard_ttest()
to accept multiple variables. by @ddsjoberg in #79 - adding
ard_svyttest()
by @ddsjoberg in #75 - Adding
ard_svycontinuous()
for weighted continuous variable summaries by @ddsjoberg in #69 ard_smd()
for weighted data by @ddsjoberg in #74- update
ard_chisqtest
to accept multiple vars. by @ayogasekaram in #93 - update
ard_fischertest()
to accept multiple vars by @ayogasekaram in #94 - update
ard_mcnemartest()
andard_kruskaltest()
by @ayogasekaram in #96 - update
ard_proptest()
andard_smd()
by @ayogasekaram in #98 - Closes #15 adds CI for univariate/single statistics by @zdz2101 in #82
- fix bugs with cohens_d/hedges_g by @zdz2101 in #102
- Closes #71 ard for svyranktest by @zdz2101 in #100
- Add ARD function for
survfit
objects by @edelarua in #59 - add
ard_aov
andard_onewaytest
by @ayogasekaram in #44 - rename functions with new package conventions. by @ayogasekaram in #110
- add
ard_aod_wald_test
function by @ayogasekaram in #99 - Adding
ard_stats_anova()
by @ddsjoberg in #107 - Use cli call env functions by @edelarua in #112
- Add
@examplesIf
to internal examples where applicable by @edelarua in #120 - update context after renaming ard_* functions by @ayogasekaram in #123
- reorganize pkgdown by @ayogasekaram in #122
- Adding
ard_survival_survdiff()
by @ddsjoberg in #119 - Bumping broom.helpers required version to 1.15.0 (first version with official support for mmrm) by @ddsjoberg in #124
- Adding model construction helpers by @ddsjoberg in #121
- added
construct_model.survey.design()
method by @ddsjoberg in #128 - adding long mcnemar by @ddsjoberg in #129
- Adding
ard_emmeans_mean_difference()
by @ddsjoberg in #130 - Remove all-NA
variable_level
column from regression ARD output by @edelarua in #135 - Closes #116 Check for other package messaging in our snapshots by @zdz2101 in #125
- Closes #104 address use of
reformulate()
for nonsyntactic names by @zdz2101 in #138 - Workflow propagation by @walkowif in #76
- cardx readme update by @ayogasekaram in #137
- Adding variable/group columns to
ard_stats_oneway_test()
results by @ddsjoberg in #141 - Closes #133 proliferate
conf.level
argument as appropriate across package by @zdz2101 in #142 - adding CIs to SMDs by @ddsjoberg in #143
- Adding method to effectsize pkg ard functions by @ddsjoberg in #144
- removing missing values before calculating values to avoid note about… by @ddsjoberg in #145
- Patch for
construct_model()
by @ddsjoberg in #147 - Add pkg installation checks for car::Anova() and stats::aov() ARD functions by @ddsjoberg in #149
- Making
ard_survey_svycontinuous()
a S3 method by @ddsjoberg in #150 - Adding one-sample CI functions by @ddsjoberg in #156
- Update
ard_survival_survfit
by @edelarua in #152 - adding
ard_survival_survfit_diff()
function by @ddsjoberg in #136 construct_model()
updates by @ddsjoberg in #159- Updating
ard_proportion_ci()
to accept categorical variables by @ddsjoberg in #158 - Fix installation note by @edelarua in #162
- Closes #103 update effectsize package and corresponding hedges_g code accordingly by @zdz2101 in #153
- standalone updates by @ddsjoberg in #166
- Checks for R 4.3 by @ddsjoberg in #165
- survey one-sample CIs by @ddsjoberg in #177
- Check for simple calls in
construct_model()
by @ddsjoberg in #179 - Rethrow error with additional context by @thisisnic in #178
- Fix bt() backtips by @ines-gimeno-molina in #175
- Survey
ard_categorical()
by @ddsjoberg in #167 - Updating CI functions by @ddsjoberg in #181
- Added check for protected names in
ard_categorical.survey.design()
by @ddsjoberg in #182 - updates to
.as_list_of_exprs()
by @ddsjoberg in #184 - review protected names and add tests by @ayogasekaram in #183
New Contributors
- @zdz2101 made their first contribution in #45
- @Melkiades made their first contribution in #51
- @rparmm made their first contribution in #62
- @edelarua made their first contribution in #59
- @walkowif made their first contribution in #76
- @thisisnic made their first contribution in #178
- @ines-gimeno-molina made their first contribution in #175
Full Changelog: https://github.com/insightsengineering/cardx/commits/v0.2.0