Code

tcgaPipeline#96

Code

Open

ttriche wants to merge 18 commits intohansenlab:develhansenlab/minfi:develfrom ttriche:masterttriche/minfi:masterCopy head branch name to clipboard

+192-28

Commits

Commits on Feb 22, 2017

• add noobPipeline(rgSet) function to make my life easier

  ttriche

  committed
  4055b7f

  Copy full SHA for 4055b7f

• fix NAMESPACE to export noobPipeline()

  ttriche

  committed
  a6f96a5

  Copy full SHA for a6f96a5

• don't try predicting sex, as it can fail

  ttriche

  committed
  7d9d630

  Copy full SHA for 7d9d630

Commits on Apr 5, 2017

• Merge remote-tracking branch 'upstream/master'

  ttriche

  committed
  248a672

  Copy full SHA for 248a672

Commits on Apr 9, 2017

• adding some rudimentary support for SNP tracking

  ttriche

  committed
  1ac7121

  Copy full SHA for 1ac7121

Commits on Apr 10, 2017

• Check to see if colnames(SNPs) == colnames(grset), else warn

  ttriche

  committed
  f8a56b4

  Copy full SHA for f8a56b4

Commits on Apr 11, 2017

• Merge remote-tracking branch 'upstream/master'

  ttriche

  committed
  b2b9f75

  Copy full SHA for b2b9f75

Commits on Apr 12, 2017

• expose getSNPs() method

  ttriche

  committed
  4509728

  Copy full SHA for 4509728

• add getSNPs method for RGChannelSet and export it

  ttriche

  committed
  09d9f40

  Copy full SHA for 09d9f40

Commits on Apr 17, 2017

• break out noobPipeline into its own function

  ttriche

  committed
  1a0c582

  Copy full SHA for 1a0c582

Commits on Apr 20, 2017

• add unit tests for noobPipeline and getSNPs

  ttriche

  committed
  142f42e

  Copy full SHA for 142f42e

• add documentation for noobPipeline and default to TCGA settings (p>0.05)

  ttriche

  committed
  c3f1dca

  Copy full SHA for c3f1dca

• Merge remote-tracking branch 'upstream/master'

  ttriche

  committed
  971d35a

  Copy full SHA for 971d35a

Commits on Apr 22, 2017

• Merge remote-tracking branch 'upstream/master'

  ttriche

  committed
  b94bbc5

  Copy full SHA for b94bbc5

Commits on May 2, 2017

• Merge remote-tracking branch 'upstream/master'

  ttriche

  committed
  4f2753d

  Copy full SHA for 4f2753d

Commits on May 10, 2017

• tidying up per Kasper; hello, tcgaPipeline()

  ttriche

  committed
  8b0a033

  Copy full SHA for 8b0a033

• update manpage for preprocessNoob to reference tcgaPipeline

  ttriche

  committed
  2ddbdab

  Copy full SHA for 2ddbdab

Commits on Jan 9, 2018

• Merge remote-tracking branch 'upstream/master'

  Show description for 3f40959
  ttriche

  committed
  3f40959

  Copy full SHA for 3f40959