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Yf coverage unifier #891

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Yf coverage unifier #891

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Commits on Dec 11, 2022

  1. New tool written. 

    Normalize Coverage.
needs basic and unit testing...
    @yfarjoun
    yfarjoun committed Dec 11, 2022
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  2. braces

    @yfarjoun
    yfarjoun committed Dec 11, 2022
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  3. -fixed a few things that prevented compilation. 

    -cleaned up signature of functions
-made the target specify the exact region of interest
    @yfarjoun
    yfarjoun committed Dec 11, 2022
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Commits on Dec 12, 2022

  1. - file streams are closed when done (output most importantly...) 

    - passes snifftest.
- needs tests.
    @yfarjoun
    yfarjoun committed Dec 12, 2022
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  2. - refactoring and trying to write tests...

    @yfarjoun
    yfarjoun committed Dec 12, 2022
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Commits on Dec 13, 2022

  1. WIP

    @yfarjoun
    yfarjoun committed Dec 13, 2022
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Commits on Dec 15, 2022

  1. - moved to Seq rather than Set 

    - removed requirement that reads are all on the same template
- now looking at actual reads, not span of the two cannonical
    @yfarjoun
    yfarjoun committed Dec 15, 2022
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  2. - randomize reads.

    @yfarjoun
    yfarjoun committed Dec 15, 2022
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  3. - logger

    @yfarjoun
    yfarjoun committed Dec 15, 2022
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Commits on Dec 16, 2022

  1. - documentation (start)

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    yfarjoun committed Dec 16, 2022
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Commits on Dec 22, 2022

  1. - cleaned up code. 

    - added some tests
- made slices work...
    @yfarjoun
    yfarjoun committed Dec 22, 2022
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Commits on Dec 25, 2022

  1. - unit tests are pretty complete 

    - need CLP test and we should be good to go....
    @yfarjoun
    yfarjoun committed Dec 25, 2022
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Commits on Dec 29, 2022

  1. - unit tests are pretty through 

    - still need to test the CLP directly.
    @yfarjoun
    yfarjoun committed Dec 29, 2022
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  2. - improved performance by not calculating the minimum over the region.

    @yfarjoun
    yfarjoun committed Dec 29, 2022
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Commits on Dec 30, 2022

  1. - removed wordy functions fixed tests

    @yfarjoun
    yfarjoun committed Dec 30, 2022
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Commits on Dec 31, 2022

  1. - completed tests. 

    - cleanup
    @yfarjoun
    yfarjoun committed Dec 31, 2022
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