Yf coverage unifier #891
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Yf coverage unifier #891
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Normalize Coverage. needs basic and unit testing...
-cleaned up signature of functions -made the target specify the exact region of interest
- passes snifftest. - needs tests.
- removed requirement that reads are all on the same template - now looking at actual reads, not span of the two cannonical
- added some tests - made slices work...
- need CLP test and we should be good to go....
- still need to test the CLP directly.
- cleanup
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A CLP to downsample a bam to a specific coverage level.
Also included is a new class "LocusTrack" which allows for a Seq[A] to be colocalized with a locus, including taking sub-loci etc.
Currently in "personal", but if this is taken in, I'm happy to move it wherever makes most sense.