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Add support for read groups in EstimatePoolingFractions #639

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Add support for read groups in EstimatePoolingFractions #639

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Commits on Dec 9, 2020

  1. Convert EstimatePoolingFractions to use the newer VCF API.

    @tfenne
    tfenne committed Dec 9, 2020
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  2. Update EstimatePoolingFractions to be able to use the per-sample/geno… 

    …type AF instead of 0/0.5/1 when available.
    @tfenne
    tfenne committed Dec 9, 2020
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Commits on Dec 12, 2020

  1. Add support for read groups in EstimatePoolingFractions 

    The `--by-sample` argument will now group input reads by their sample
name specified in their corresponding read group.  In this case, reads
without a read group are ignored, and read groups with the same sample
are jointly estimated.
    @nh13
    nh13 committed Dec 12, 2020
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  2. add a unit test

    @nh13
    nh13 committed Dec 12, 2020
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