Add support for read groups in EstimatePoolingFractions #639
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…type AF instead of 0/0.5/1 when available.
The `--by-sample` argument will now group input reads by their sample name specified in their corresponding read group. In this case, reads without a read group are ignored, and read groups with the same sample are jointly estimated.
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The
--by-sampleargument will now group input reads by their samplename specified in their corresponding read group. In this case, reads
without a read group are ignored, and read groups with the same sample
are jointly estimated.