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1. shinyPathCluster shinyPathCluster Public

   Defining similarities between pathways (gene set enrichment analysis from for example GO, KEGG, msigDB, etc.) to cluster similar pathways. Defining a title for the cluster. Displaying Clusters in a…

   R 1

2. vcf_ML vcf_ML Public

   Binary Classifier. Takes vcf file and corresponding sample disease label as input. Depends on VariantSpark

   Scala

3. wgsPIPE wgsPIPE Public

   Bash pipeline for whole-genome sequencing analysis or pre-processing.

   Shell

4. german_credit german_credit Public

   R machine learning challenge on public German credit dataset

   HTML

5. RNA_prot_corr_sim RNA_prot_corr_sim Public

   Shiny app to remember how varying soma:synapse ratio and spatial separation of RNA and protein could theoretically lead to the observation of negative correlation between RNA and protein expression…

   R

6. img_value_analyser img_value_analyser Public

   Plotting distibution of grayscale values of a image and calculating relative amounts of lights, midtones and darks.

   Jupyter Notebook