This repository includes some utilities to handle hpapdata
.
rename_histology.py
: based on this script (inhpap-apps
repository)rename_imc.py
: based on this script (inpennsieve-utils
repository)
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Python 3.7+
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requirements.txt
Run the following commands before using any Python scripts in this repository:
# Create a Python virtual environment
python3 -m venv venv-hpapdata-utils
# Activate the virtual environment
source venv-hpapdata-utils/bin/activate
# Install required packages
cd <path>/hpapdata-utils
pip install -r requirements.txt
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See HPAP documentations at: https://github.com/faryabiLab/hpap-hub#1-hpap-documentation
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HPAP back-end and front-end source code is hosted at: https://github.com/faryabiLab/hpap
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To add new HPAP issues, go to: https://github.com/faryabiLab/hpap-hub/issues