README.md

hpapdata-utils

This repository includes some utilities to handle hpapdata.

• rename_histology.py: based on this script (in hpap-apps repository)
• rename_imc.py: based on this script (in pennsieve-utils repository)

1. Requirements:

1. Python 3.7+

2. requirements.txt

2. Setup

Run the following commands before using any Python scripts in this repository:

# Create a Python virtual environment
python3 -m venv venv-hpapdata-utils

# Activate the virtual environment
source venv-hpapdata-utils/bin/activate

# Install required packages
cd <path>/hpapdata-utils
pip install -r requirements.txt

3. Related Resources

• See HPAP documentations at: https://github.com/faryabiLab/hpap-hub#1-hpap-documentation

• HPAP back-end and front-end source code is hosted at: https://github.com/faryabiLab/hpap

• To add new HPAP issues, go to: https://github.com/faryabiLab/hpap-hub/issues