change to gha: install package after installing dependencies

emdb-empiar · Oct 3, 2023 · 7c08b31 · 7c08b31
1 parent cc0bcf3
commit 7c08b31
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Showing 3 changed files with 12 additions and 10 deletions.
diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
@@ -28,6 +28,8 @@ jobs:
         python -m pip install --upgrade pip
         python -m pip install flake8 pytest pytest-cov numpy
         python -m pip install coverage coveralls
+    - name: Install sfftk package
+      run: |
         python -m pip install -e .
     - name: Lint with flake8
       run: |

diff --git a/sfftk/test_data/sff/v0.8/output_emd_1181.json b/sfftk/test_data/sff/v0.8/output_emd_1181.json
@@ -45,15 +45,15 @@
       "id": 15559,
       "parent_id": 0,
       "biological_annotation": {
-        "name": "detention factory bias",
-        "description": "Venenatis ipsum no tortorvestibulum vestibulum, duimauris aliquam eratproin volutpat sed justo tortor bibendumin. Hendrerit consequat tincidunt telluspraesent.",
-        "number_of_instances": 273,
+        "name": "twins pull multimeters",
+        "description": "Ut nisised sagittis nondonec cursus autem, per volutpatut facilisicurabitur enimaliquam aliquammauris lorem no viverra. Nonumy phasellus.",
+        "number_of_instances": 813,
         "external_references": [
           {
             "id": 0,
-            "resource": "rust",
-            "url": "wheels",
-            "accession": "steeple",
+            "resource": "twirls",
+            "url": "telecommunications",
+            "accession": "folder",
             "label": null,
             "description": null
           }

diff --git a/sfftk/test_data/sff/v0.8/output_emd_1181.sff b/sfftk/test_data/sff/v0.8/output_emd_1181.sff
@@ -28,12 +28,12 @@
     <segment_list>
         <segment id="15559" parent_id="0">
             <biological_annotation>
-                <name>fire fakes unit</name>
-                <description>Eget consequatduis dictumst auctor venenatis mauris maecenas, enimaliquam est parturient sanctus muspellentesque vitae libero purusvestibulum. Dolores porta dui pulvinarvestibulum feugiat, iaculis condimentum nostra habitasse facilisicurabitur imperdiet natoque ligula fusce voluptua.</description>
+                <name>costs decay systems</name>
+                <description>Euismod sodales nullamauris, condimentum nisised ad kasd nunccurabitur. Illum pellentesque eos diaminteger donec quammaecenas stet, elitnunc libero fermentumfusce nullasuspendisse vitae viverra.</description>
                 <external_references>
-                    <ref id="0" resource="supervision" url="managers" accession="decontamination"/>
+                    <ref id="0" resource="broadcast" url="types" accession="signs"/>
                 </external_references>
-                <number_of_instances>101</number_of_instances>
+                <number_of_instances>935</number_of_instances>
             </biological_annotation>
             <colour>
                 <red>0.921817600727081</red>