v0.9.0.dev2: minor corrections and cleanup

emdb-empiar · Oct 3, 2023 · cc0bcf3 · cc0bcf3
1 parent 0f751a6
commit cc0bcf3
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Showing 3 changed files with 4 additions and 2 deletions.
diff --git a/sfftk/__init__.py b/sfftk/__init__.py
@@ -3,4 +3,4 @@
 
 BASE_DIR = os.path.dirname(__file__)
 
-SFFTK_VERSION = 'v0.9.0.dev1'
+SFFTK_VERSION = 'v0.9.0.dev2'
diff --git a/sfftk/core/parser.py b/sfftk/core/parser.py
@@ -428,7 +428,7 @@
 starcrop_prep_parser = prep_subparsers.add_parser(
     'starcrop',
     description='Truncate a composite star file to the specified number of rows (default: 100)',
-    help='split a composite star file into individual star files',
+    help='truncate a star file to have as many rows as specified (exluding header)',
 )
 add_args(starcrop_prep_parser, config_path)
 add_args(starcrop_prep_parser, shipped_configs)

diff --git a/sfftk/unittests/test_readers.py b/sfftk/unittests/test_readers.py
@@ -583,7 +583,9 @@ def test_compute_affine_transforms(self):
         star_reader = starreader.StarReader()
         star_reader.parse(TEST_DATA_PATH / 'segmentations' / 'test_data4.star')
         row = star_reader.tables['_rln'][0]
+        print(row)
         transform_zyz = row.to_affine_transform()  # default axes
+        print(transform_zyz)
         psi = radians(30)
         theta = radians(30)
         phi = radians(30)
Original file line number	Diff line number	Diff line change
Expand Up		@@ -3,4 +3,4 @@

		BASE_DIR = os.path.dirname(__file__)

		SFFTK_VERSION = 'v0.9.0.dev1'
		SFFTK_VERSION = 'v0.9.0.dev2'