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Feature/modular model outputs #7

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Feature/modular model outputs #7

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collinschwantes
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  1. Created a framework for having modular model outputs - each run generates outputs in a certain folder
  2. Uses targets to execute code, functionalized run scripts, and made certain variables global

@collinschwantes
added a function for managing model outputs
a7acc47
@collinschwantes
adding gitignore
eaf3351
@collinschwantes
adding Rproj file
222cf98
@collinschwantes
updated mangage data functions to have read, write, delete and set op…
5efc01a 
…tions
@collinschwantes
added file management functions to scripts
a7aa636
@collinschwantes
added more scripts to the file mgmt system
cd97ba3
@collinschwantes
added model_run_path to outputs
7c334d1
@collinschwantes
added a script to run scripts as jobs
c044259
@collinschwantes
added a script that waits for a file to exist
bfa5796
@collinschwantes
added wait function
387bfe9
@collinschwantes
corrected the save path and specified it in the save function
371dd99
@collinschwantes
adding library calls as we now load in the simulation data necessary …
6f56f0f 
…for R0
@collinschwantes
commented out functions that don't appear to be used
7919949
@collinschwantes
added a print statement to give the model run id and corrected the ar…
2d93dde 
…guemnt order in write_param_vec
@collinschwantes
using targets to control the workflow
3614dfe
@collinschwantes
updated to accomodate targets workflow
db791a6
@collinschwantes
adding packages file
1405387
@collinschwantes
added packages.R
ce003c1
@collinschwantes
turned the script into a function for use in targets
ec5c194
@collinschwantes
turned 2_RVF into a function for targets
263d013
@collinschwantes
turned 3- into a function for targets
0b43f5b
@collinschwantes
removed library loads from function and placed them in packages.R file
cb00860
@collinschwantes
updated functions to remove library calls and added a trigger calc fu…
7c06081 
…nction
@collinschwantes
renamed function to follow convention
ea32aa4
@collinschwantes
added h parameter to function to control number of sims. Default is 4k
8c0226d
@collinschwantes
updated targets to use functions instead of sourcing files
36d756b
@collinschwantes
updated targets to use functions instead of sourcing files
e9110b9
@collinschwantes
added alphabetical prefixes to targets so they run in order... not my…
0f05244 
… favorite idea
@collinschwantes
made params.matric_trans a global variable
b864e11
@collinschwantes
fixed issues with global variables, paths, and makeing sure target ou…
f5c9fea 
…tputs update with new file paths
@collinschwantes
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@rostal Runs as expected, still needs a little documentation for new functions

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@collinschwantes