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Update SQL for non-priority case in cell plot #384

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merged 7 commits into from
Apr 9, 2024
Merged

Update SQL for non-priority case in cell plot #384

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e1c0e99
Update SQL for non-priority case in cell plot
lingyun1010 Jan 24, 2024
ab9b584
Update test for unique cell plot methods
lingyun1010 Feb 20, 2024
e9ddaac
Update UMAP and t-SNE format in test
lingyun1010 Feb 20, 2024
a1c0fa1
Debug default parameter and method SQL
lingyun1010 Feb 21, 2024
5c2a8bc
Merge branch 'develop' into 374-experiments-default-plot-option-is-no…
lingyun1010 Feb 28, 2024
598cb0e
Remove the hard code test on cell plot method test
lingyun1010 Mar 7, 2024
911642d
Merge branch '374-experiments-default-plot-option-is-not-correctly-di…
lingyun1010 Mar 7, 2024
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5 changes: 3 additions & 2 deletions app/src/main/java/uk/ac/ebi/atlas/experimentpage/cellplot/CellPlotDao.java
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Original file line number Diff line number Diff line change
Expand Up @@ -157,14 +157,15 @@ public List<String> fetchCellPlotParameter(String experimentAccession, String me


private static final String SELECT_DEFAULT_PLOT_METHOD_AND_PARAMETERISATION =
"SELECT dr.method, jsonb_array_elements(dr.parameterisation) parameterisation " +
"SELECT DISTINCT dr.method, jsonb_array_elements(dr.parameterisation) parameterisation " +
"FROM scxa_dimension_reduction dr " +
"JOIN (SELECT method, max(priority) as prt " +
"FROM scxa_dimension_reduction " +
"WHERE experiment_accession=:experiment_accession " +
" GROUP BY method) fi " +
"ON dr.method = fi.method " +
"AND dr.priority = fi.prt";
"AND dr.priority = fi.prt " +
"ORDER BY parameterisation";

public Map<String, List<JsonObject>> fetchDefaultPlotMethodWithParameterisation(String experimentAccession) {
var namedParameters = ImmutableMap.of("experiment_accession", experimentAccession);
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