Add `primary_key` to manifest #11375

Job	Run time
integration test metadata generation	1s
Test Log Schema (1)	3m 50s
Test Log Schema (2)	2m 51s
Test Log Schema (3)	3m 46s
Test Log Schema (4)	3m 45s
Test Log Schema (5)	4m 8s
Log Schema Test Suite	1s
	18m 22s

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