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v0.0.2 #24

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@stolarczyk stolarczyk commented Sep 10, 2020 •
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stolarczyk and others added 30 commits May 28, 2020 16:44
@stolarczyk
init dev branch
49d60a0
@stolarczyk
changes related to DB switch to postgres
fa6074f
@stolarczyk
insert sample-specific metadata as jsonb column
9c8422d
@stolarczyk
piface naming, remove old
010006e
@stolarczyk
save plots metadata separately
79dd00e
@stolarczyk
Update README.md
7f5b729
@stolarczyk
Update README.md
35e51c0
@stolarczyk
setup pipeline testing
3d29d53
@stolarczyk
use builtin env var
ba0c6fd
@stolarczyk
install r deps
a24500d
@stolarczyk
set up r
5109873
@stolarczyk
install libcurl
cadbfa4
@stolarczyk
test plots existence
2318146
@stolarczyk
fix format
303a229
@stolarczyk
test record in postgres
3f78eee
@stolarczyk
no GDData install, add badge
fe26373
@stolarczyk
bring GDData back
5af1967
@stolarczyk
update dev reqs
a281f50
@stolarczyk
initialize other dict earlier
ba0eb5d
@xuebingjie1990
add pre_submit
7a29ff0
@nsheff
fix piface
f0c23dc
@nsheff
Merge branch 'dev' of github.com:databio/bedstat into dev
16211ad
@stolarczyk
remove duplicated pre_submit section
52c5903
@stolarczyk
fix pipeline path specification in the piface
c1c7b7d
@stolarczyk
fix pipeline path specification in the piface
e5bf50a
@stolarczyk
cli accept and save relative bed path; #25
dbab12f
@stolarczyk
determine and feed the rscript with relative path; #25
5de0f55
@stolarczyk
use output getters
7599c7e
@stolarczyk
new BedBaseConf updates
0320ab0
@stolarczyk
regionstat script fixes
f8edce1
xuebingjie1990 and others added 30 commits December 18, 2020 16:52
@xuebingjie1990
report bigbed path, rm bigbed generateion step
91ed853
@xuebingjie1990
report abs path for bigbed files
22c59f1
@xuebingjie1990
bigbed file path
e404e43
@xuebingjie1990
resolve ../ in the file/img path
177cb47
@stolarczyk
Merge pull request #26 from databio/trackHub
bb8ec89 
create bigbed files
@stolarczyk
reformat code
e808a80
@stolarczyk
add linter
402e86c
@xuebingjie1990
report refgenie genome digest
406e7f0
@xuebingjie1990
report refgenie genome digest
f074e80
@xuebingjie1990
fix typo, format code
e84af7b
@xuebingjie1990
update genome field
7f9e5be
@xuebingjie1990
rm quotes
ce340bf
@xuebingjie1990
add file size, refgenie digest
06220bd
@xuebingjie1990
rm pandas
3576289
@xuebingjie1990
just db commit
8107b43
@xuebingjie1990
add genome without digest if genome not validated with regenie
ab204e6
@xuebingjie1990
summary statistic for distance to TSS #31
f314888
@xuebingjie1990
rename median_TSS_dist
5f33b8a
@xuebingjie1990
fix The unauthenticated git protocol on port 9418 is no longer suppor…
8ab7871 
…ted.
@xuebingjie1990
update Rdeps, rounding stats #27
b40ed1f
@xuebingjie1990
rm R pkg 'conflicted', no need
5a7ff6c
@xuebingjie1990
#32
beaa0c4
@xuebingjie1990
report reord with missing stats
9f455dd
@xuebingjie1990
report metadata for reord with missing stats
301798d
@xuebingjie1990
report metadata for reord with missing stats
b0053ce
@xuebingjie1990
report metadata for reord with missing stats
d061fe8
@xuebingjie1990
skip GD stats/plot if file missing
5373505
@xuebingjie1990
Merge pull request #30 from databio/validate_genome_assembly
1ae866b 
Validate genome assembly with Refgenie
@nsheff
Update installRdeps.R
bf33b3f
@nsheff
never mind, that was a bad idea.
07f1661
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3 participants
@stolarczyk @nsheff @xuebingjie1990