report refgenie genome digest

databio · Mar 26, 2021 · f074e80 · nsheff · Mar 26, 2021 · f074e80
1 parent 406e7f0
commit f074e80
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/pipeline/bedstat.py b/pipeline/bedstat.py
@@ -15,6 +15,7 @@
 import os
 import warnings
 import tempfile
+import requests
 
 import pypiper
 import bbconf
@@ -141,6 +142,10 @@
         ) and not os.path.islink(
             os.path.join(args.bigbed, fileid + ".bigBed")
         ):
+        digest = requset.get(f"http://refgenomes.databio.org/genomes/genome_digest/{args.genome_assembly}")
+        data.update(
+            {"genome": {args.genome_assembly: digest}}
+        )
         data.update(
             {"bigbedfile": {"path": bigbed_relpath, "title": "Path to the big BED file"}}
         )