Update Dockerfile

compbiocore · Mar 11, 2024 · f815707 · f815707
1 parent 3fc745f
commit f815707
Showing 1 changed file with 13 additions and 0 deletions.
diff --git a/metadata/Dockerfile b/metadata/Dockerfile
@@ -1 +1,14 @@
 FROM ghcr.io/compbiocore/bootcamp_scrna:mar_11_12-29-24_2024
+RUN R -e "BiocManager::install(c('biomaRt'))"
+RUN R -e "BiocManager::install(c('BSgenome.Hsapiens.UCSC.hg19'))"
+RUN R -e "BiocManager::install(c('BSgenome'))"
+RUN R -e "BiocManager::install(c('DESeq2'))"
+RUN R -e "BiocManager::install(c('DT'))"
+RUN R -e "BiocManager::install(c('enrichplot'))"
+RUN R -e "BiocManager::install(c('ensembldb'))"
+RUN R -e "BiocManager::install(c('GenomeInfoDb'))"
+RUN R -e "BiocManager::install(c('GenomicFeatures'))"
+RUN R -e "BiocManager::install(c('limma'))"
+RUN R -e "BiocManager::install(c('S4Vectors'))"
+RUN R -e "BiocManager::install(c('SingleCellExperiment'))"
+RUN R -e "BiocManager::install(c('SummarizedExperiment'))"