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@compbiocore

Computational Biology Core

Brown University - Center for Computation and Visualization

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  1. bioflows bioflows Public

    Bioflows is an easy to use package for running bioinformatics workflows.

    Python 4 4

  2. cbc-documentation-templates cbc-documentation-templates Public

    Repository for documentation templates.

    CSS 6 4

  3. jupyterfleet jupyterfleet Public

    Cohesive utility to deploy and configure a group of AWS instances running Jupyter for teaching

    Python 1

  4. qckit qckit Public

    Website for qckit, R packages for quality control of genomic sequencing data

    CSS 1

  5. refchef refchef Public

    YAML-based genomics reference management.

    Python 4 2

  6. RSeqAn RSeqAn Public

    SeqAn headers for R

    C++ 3 2

Repositories

Showing 10 of 105 repositories
  • brodsky_scte Public

    Apply the scTE pipeline to process human cartilage data from Ji et al 2017 and try to identify clusters corresponding to transposable elements, specifically Line1 elements.

    compbiocore/brodsky_scte’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Nov 12, 2024
  • refchef-test Public
    compbiocore/refchef-test’s past year of commit activity
    0 0 0 0 Updated Sep 4, 2024
  • refchef Public

    YAML-based genomics reference management.

    compbiocore/refchef’s past year of commit activity
    Python 4 GPL-3.0 2 9 0 Updated Aug 27, 2024
  • cbc-references-refchef Public

    Computational Biology Core List of References for RefChef

    compbiocore/cbc-references-refchef’s past year of commit activity
    Python 0 GPL-3.0 0 0 1 Updated Aug 27, 2024
  • dennery_reanalysis_2024 Public
    compbiocore/dennery_reanalysis_2024’s past year of commit activity
    0 MIT 0 0 0 Updated Aug 1, 2024
  • ccv_bootcamp_scrna Public
    compbiocore/ccv_bootcamp_scrna’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jul 15, 2024
  • ccv_bootcamp_phylogenetics Public

    Phylogenetics workshop for CCV Bootcamp 2024

    compbiocore/ccv_bootcamp_phylogenetics’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Jun 14, 2024
  • ccv_bootcamp_annotations Public
    compbiocore/ccv_bootcamp_annotations’s past year of commit activity
    Dockerfile 0 MIT 0 0 0 Updated Jun 14, 2024
  • workflows_for_repr_research Public
    compbiocore/workflows_for_repr_research’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 14, 2024
  • workflows_workshop Public
    compbiocore/workflows_workshop’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 13, 2024
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