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157 Open 472 Closed
157 Open 472 Closed
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Issues list

ALIGNMENT PIPELINE ERROR
#711 opened Mar 4, 2022 by seamyname
2
Problem uploading samples
#701 opened Oct 31, 2019 by Zymergen-SBRUBAKER
36
Files uploaded through browser remain in /tmp after completion bug
#700 opened Apr 6, 2018 by glebkuznetsov
Generate New Reference Genome: ERROR: More than one record found in handle
#699 opened Mar 7, 2018 by bfurtwa
5
How is extremely high-coverage defined?
#698 opened Mar 7, 2018 by bfurtwa
1
jbrowse contig fail
#696 opened Nov 13, 2017 by MaxSchubert
filter key Gene non-functional
#695 opened Nov 10, 2017 by MaxSchubert
Genbank exported from latest version of Geneious appears to cause error
#694 opened Jul 13, 2017 by glebkuznetsov
OptMAGE only works with MG1655
#691 opened Jan 23, 2017 by dbgoodman
OptMAGE support doesn't work for multi-bp SNVs
#690 opened Jan 23, 2017 by dbgoodman
Jbrowse tracks for deleted alignments get left behind
#689 opened Oct 12, 2016 by dbgoodman
Make queries be case insensitive low priority
#688 opened Sep 27, 2016 by dbgoodman
Velvetg runs out of memory during graph building bug
#687 opened Sep 15, 2016 by glebkuznetsov
Contig calling shows QUEUED_TO_ASSEMBLE even though really ASSEMBLING, sometimes. bug
#686 opened Jun 24, 2016 by glebkuznetsov
JBrowse warning when re-running contig pipeline bug
#685 opened Jun 23, 2016 by glebkuznetsov
2
On variant csv export, what to do about LONG REF/ALT alleles? bug
#683 opened Jun 21, 2016 by dbgoodman
If materialization is kicked off from the variant view UI, and page is refreshes, materialization happens again and they collide. bug
#677 opened Jun 9, 2016 by dbgoodman
3
Look into custom SV calling pipeline parallelization. bug
#676 opened Jun 9, 2016 by glebkuznetsov
Mobile Element finding crashes when contigs are identified across two IS elements bug
#675 opened Jun 1, 2016 by dbgoodman
Make SVs from Brian's Pipeline flip the IS_SV flag bug sv_cleanup
#673 opened May 30, 2016 by dbgoodman
Annotation on SVs (maybe SnpEff?) enhancement sv_cleanup
#672 opened May 30, 2016 by glebkuznetsov
Need to be more stringent when calling deletions using low coverage bug sv_cleanup
#671 opened May 30, 2016 by glebkuznetsov
1
Millstone does not like certain .gb template files, throws "next iteration" error bug
#669 opened May 26, 2016 by mnapolitano89
2
Millstone not collecting unused reads for contig assembly use bug
#668 opened May 26, 2016 by mnapolitano89
4
Make SnpEff an option the user can control enhancement
#667 opened May 23, 2016 by glebkuznetsov
ProTip! Exclude everything labeled bug with -label:bug.