put None for strand_transform in hound_ism_bed hound_ism_snp to pass …

…test
calico · Apr 9, 2024 · 95e0b09 · 95e0b09
1 parent 0c8021b
commit 95e0b09
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diff --git a/src/baskerville/scripts/hound_ism_bed.py b/src/baskerville/scripts/hound_ism_bed.py
@@ -276,7 +276,7 @@ def main():
                     alt_preds = np.array(alt_preds)
 
                     ism_scores = snps.compute_scores(
-                        ref_preds, alt_preds, options.snp_stats, strand_transform
+                        ref_preds, alt_preds, options.snp_stats, None
                     )
                     for snp_stat in options.snp_stats:
                         scores_h5[snp_stat][si, mi - mut_start, ni] = ism_scores[

diff --git a/src/baskerville/scripts/hound_ism_snp.py b/src/baskerville/scripts/hound_ism_snp.py
@@ -250,7 +250,7 @@ def main():
                     alt_preds = np.array(alt_preds)
 
                     ism_scores = snps.compute_scores(
-                        ref_preds, alt_preds, options.snp_stats, strand_transform
+                        ref_preds, alt_preds, options.snp_stats, None
                     )
                     for snp_stat in options.snp_stats:
                         scores_h5[snp_stat][si, mi - mut_start, ni] = ism_scores[