add strand_transform to hound_ism_bed line 278 fix missing arg

calico · Apr 9, 2024 · 0c8021b · 0c8021b
1 parent 6f0ee9b
commit 0c8021b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/baskerville/scripts/hound_ism_bed.py b/src/baskerville/scripts/hound_ism_bed.py
@@ -276,7 +276,7 @@ def main():
                     alt_preds = np.array(alt_preds)
 
                     ism_scores = snps.compute_scores(
-                        ref_preds, alt_preds, options.snp_stats
+                        ref_preds, alt_preds, options.snp_stats, strand_transform
                     )
                     for snp_stat in options.snp_stats:
                         scores_h5[snp_stat][si, mi - mut_start, ni] = ism_scores[