feat: isolate test suite

.gitattributes

@@ -0,0 +1 @@
+*.tar.gz filter=lfs diff=lfs merge=lfs -text

.github/workflows/test-B01_SL_load_single_file.yml → .github/workflows/test_icesat2_tracks_pipeline.yml

@@ -1,4 +1,4 @@
-name: Test Steps
+name: Smoke Tests
 on:
   pull_request: {}
   push:
@@ -35,16 +35,16 @@ jobs:
             icesat2waves correct-separate --help # prelim name
 
       - name: first step B01_SL_load_single_file
-        run: load-file --track-name 20190502052058_05180312_005_01 --batch-key SH_testSLsinglefile2 --output-dir ./work
+        run: load-file --track-name 20190502052058_05180312_005_01 --batch-key SH_testSLsinglefile2 --output-dir ./work --verbose
       - name: second step make_spectra
-        run: make-spectra --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work
+        run: make-spectra --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work --verbose
       - name: third step plot_spectra
-        run: plot-spectra --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work
+        run: plot-spectra --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work --verbose
       - name: fouth step IOWAGA threads 
-        run:  make-iowaga-threads-prior --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work
+        run:  make-iowaga-threads-prior --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work --verbose
       - name: fifth step B04_angle
-        run: make-b04-angle --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work
+        run: make-b04-angle --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work --verbose
       - name: sixth step B04_define_angle
-        run: define-angle --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work
+        run: define-angle --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work --verbose
       - name: seventh step B06_correct_separate
-        run: correct-separate --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work
+        run: correct-separate --track-name SH_20190502_05180312 --batch-key SH_testSLsinglefile2 --output-dir ./work --verbose

.github/workflows/test_test_suite.yml

@@ -0,0 +1,30 @@
+name: Test Steps
+on:
+  pull_request: {}
+  push:
+    branches: [ main ]
+jobs:
+  python_run_scripts:
+    strategy:
+      fail-fast: false
+      matrix:
+        version: ['3.11']
+    runs-on: ubuntu-22.04
+    steps:
+      - name: install mpi
+        run: sudo apt update && sudo apt-get install openmpi-bin openmpi-doc libopenmpi-dev 
+      - uses: actions/checkout@v3
+        with:
+          lfs: true
+      - name: setup python
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.version }} # install the python version needed
+          cache: "pip"
+      - name: install icesat2-tracks using pip
+        run: pip install .
+      - name: install pytest
+        run: pip install pytest pytest-xdist pytest-sugar pytest-durations
+      - name: Run tests
+        run: pytest --capture=sys --verbose --showlocals --tb=long --numprocesses=auto tests/test_steps.py
+