CLI Tools, CLI for Steps 1-7

.github/workflows/test-B01_SL_load_single_file.yml

@@ -1,4 +1,4 @@
-name: Test B01_SL_load_single_file
+name: Test Steps
 on:
   pull_request: {}
   push:
@@ -23,8 +23,12 @@ jobs:
         run: pip install .
       - name: List dependencies
         run: pip list
+      - name: test icesat2waves app
+        run: icesat2waves --help
+      - name: test command for step 1
+        run: load_single_file --help
       - name: first step B01_SL_load_single_file
-        run: python src/icesat2_tracks/analysis_db/B01_SL_load_single_file.py 20190502052058_05180312_005_01 SH_testSLsinglefile2 True
+        run: python src/icesat2_tracks/analysis_db/B01_SL_load_single_file.py --track-name 20190502052058_05180312_005_01 --batch-key SH_testSLsinglefile2 --output-dir .
       - name: second step make_spectra
         run: python src/icesat2_tracks/analysis_db/B02_make_spectra_gFT.py SH_20190502_05180312 SH_testSLsinglefile2 True
       - name: third step plot_spectra
@@ -37,4 +41,3 @@ jobs:
         run: python src/icesat2_tracks/analysis_db/B05_define_angle.py SH_20190502_05180312 SH_testSLsinglefile2 True
       - name: Seventh step B06_correct_separate_var
         run: python src/icesat2_tracks/analysis_db/B06_correct_separate_var.py SH_20190502_05180312 SH_testSLsinglefile2 True
-

pyproject.toml

@@ -120,7 +120,9 @@ dependencies = [ # Optional
   "emcee >=3.1.4, <4.0.0",
   "netCDF4 >=1.6.5, <2.0.0",
   "siphon >=0.9, <1.0.0",
-  "h5py >=3.5.0, < 4.0.0"
+  "h5py >=3.5.0, < 4.0.0",
+  "termcolor >=2.4.0, < 3.0.0",
+  "typer >=0.9.0, < 1.0.0",
 ]
 
 # List additional groups of dependencies   here (e.g. development
@@ -133,7 +135,7 @@ dependencies = [ # Optional
 # projects.
 [project.optional-dependencies] # Optional
 dev = ["check-manifest","black","icesat2-tracks[test]"]
-test = ["coverage"]
+test = ["coverage", "pytest >=7.4.4, <8.0.0", "pytest-xdist >=3.5.0, <4.0.0"]
 
 # List URLs that are relevant to your project
 #
@@ -155,6 +157,9 @@ test = ["coverage"]
 [project.scripts]  # Optional
 #TODO: ADD ANY SCRIPTS WE WANT TO HAVE
 download = "icesat2_tracks.icesat2_tools_scripts.nsidc_icesat2_associated2:main"
+load_single_file = "icesat2_tracks.analysis_db.B01_SL_load_single_file:step1app"
+icesat2waves = "icesat2_tracks.app:app"
+
 
 # This is configuration specific to the `setuptools` build backend.
 # If you are using a different build backend, you will need to change this.