ENH: add actions to partition and collate mags

[Sann5]

What's new

• The action eggnog-diamond-search can take as input FeatureData[MAG] artifacts.
• This action can be sped up considerably running it on individual parts of the input simultaneously. See this part of the eggnog wiki.
• Therefore we introduce an action partition-feature-data-mags which splits the input into smaller artifacts on which eggnog-diamond-search can be run individually.
• We also introduce a collate-feature-data-mags action which does the opposite, namely takes many FeatureData[MAG] and outputs one.
• We also introduce the same actions but for SampleData[MAGs]; partition-sample-data-mags and collate-sample-data-mags
• Closes ENH: enable parsl parallelization of eggnog-diamond-search #126

Set up an environment

# For linux: 
# export MY_OS="linux"
# For mac:
export MY_OS="osx" 
wget "https://data.qiime2.org/distro/shotgun/qiime2-shotgun-2023.9-py38-"$MY_OS"-conda.yml"
conda env create -n q2-shotgun --file qiime2-shotgun-2023.9-py38-osx-conda.yml
rm "qiime2-shotgun-2023.9-py38-"$MY_OS"-conda.yml"

Now clone the repo and checkout the PR branch (skip this step if you already have a local copy of the code):

# Remove q2-moshpit so you can install your local version.
conda activate q2-shotgun
conda remove q2-moshpit

# clone from GitHub
git clone [email protected]:bokulich-lab/q2-moshpit.git
cd q2-moshpit
gh pr checkout 137
pip install -e .

Run it locally

FeatrueData[MAG]

1. Let's get you some data to play with:

cd <somewhere>
wget https://polybox.ethz.ch/index.php/s/WnZanIQECtwPEVu/download -O mags.qza

2. Test it out!

### Partition
qiime moshpit partition-feature-data-mags --i-mags collated_mags.qza --o-partitioned-mags partitioned_mags --verbose

### Collate
iime moshpit collate-feature-data-mags --i-mags partitioned_mags --o-collated-mags collated_mags.qza --verbose

SampleData[MAGs]

1. Let's get you some data to play with:

cd <somewhere>
wget https://polybox.ethz.ch/index.php/s/slGyW1uQbyxmyb9/download -O collated_mags.qza

2. Test it out!

### Partition
qiime moshpit partition-sample-data-mags --i-mags mags.qza --o-partitioned-mags partitioned_mags --verbose --p-num-partitions 3
### Collate
qiime moshpit collate-sample-data-mags --i-mags partitioned_mags --o-collated-mags collated_mags.qza --verbose

Running the tests

pytest -W ignore -vv --pyargs q2_moshpit

[misialq]

Hey @Sann5, this PR is being replaced by #144 (which builds on top of this one and where @Oddant1 is also directly adding support for eggnog parallelization).