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upgrade to bdg utils 0.2.1 #678

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merged 6 commits into from
May 26, 2015
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ryan-williams
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Forked from #664

Fixes #662, #657, #634, #603, #581.
#664 claimed to fix #536 as well but it's not obvious to me that this does in fact support scala 2.11 so I'm not including that, though I'm interested to see whether Github is smart enough to parse that from this text.

@laserson
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I didn't check this as carefully as Frank's original PR. I'm guessing this is good to go on your end? I'll just wait for the green light from jenkins.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/703/
Test PASSed.

@ryan-williams
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Yea it's just his PR with two commits on it, one was a merge with one trivial conflict that I resolved, and one is a couple of unused import removals.

laserson added a commit that referenced this pull request May 26, 2015
@laserson laserson merged commit 15c8cad into bigdatagenomics:master May 26, 2015
@ryan-williams ryan-williams mentioned this pull request May 26, 2015
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Kill job argument to ADAMSparkCommand.run? scala 2.11
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