ci: using uv to setup python and install dependencies for github actions

.github/workflows/pre-commit.yaml

@@ -25,9 +25,15 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v4
-    - uses: actions/setup-python@v5
+    - name: install the latest version uv
+      uses: astral-sh/setup-uv@v3
       with:
-        python-version: '3.10'
-    - run: pip install pre-commit
-    - run: pre-commit install
-    - run: pre-commit run --all-files
+        version: latest
+    - name: create virtual environment
+      run: uv venv --python '3.10'
+    - name: install pre-commit
+      run: uv pip install pre-commit
+    - name: install pre-commit hooks
+      run: uv run pre-commit install
+    - name: Run pre-commit hooks
+      run: uv run pre-commit run --all-files

.github/workflows/tests.yaml

@@ -25,12 +25,14 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - uses: actions/checkout@v4
-      - run: pipx install poetry
-      - uses: actions/setup-python@v5
+      - name: install the latest version uv
+        uses: astral-sh/setup-uv@v3
         with:
-          python-version: ${{ matrix.python-version }}
-          cache: 'poetry'
-          cache-dependency-path: '**/pyproject.toml'
-      - run: poetry install
-      - run: poetry run pytest -m ""  # Run all markers
+          version: latest
+      - name: create virtual environment
+        run: uv venv --python ${{ matrix.python-version }}
+      - name: Install
+        run: uv pip install ".[dev]"
+      - name: Run tests
+        run: uv run pytest -m ""  # Run all markers
 

.gitignore

@@ -1,4 +1,7 @@
-#False Python
+# build files
+*.egg-info
+
+# False Python
 __pycache__
 dist
 

pyproject.toml

@@ -1,27 +1,24 @@
-[tool.poetry]
+[project]
 name = "neural-pipeline-search"
 version = "v0.12.2"
 description = "Neural Pipeline Search helps deep learning experts find the best neural pipeline."
 authors = [
-    "Danny Stoll <[email protected]>",
-    "Neeratyoy Mallik <[email protected]>",
-    "Simon Schrodi",
-    "Eddie Bergman",
-    "Maciej Janowski",
-    "Samir Garibov",
-    "Tarek Abou Chakra",
-    "Daniel Rogalla",
-    "Carl Hvarfner",
-    "Binxin Ru",
-    "Nils Kober",
-    "Théophane Vallaeys",
-    "Frank Hutter",
+    { name = "Danny Stoll", email = "[email protected]" },
+    { name = "Neeratyoy Mallik", email = "[email protected]" },
+    { name = "Simon Schrodi" },
+    { name = "Eddie Bergman" },
+    { name = "Maciej Janowski" },
+    { name = "Samir Garibov" },
+    { name = "Tarek Abou Chakra" },
+    { name = "Daniel Rogalla" },
+    { name = "Carl Hvarfner" },
+    { name = "Binxin Ru" },
+    { name = "Nils Kober" },
+    { name = "Théophane Vallaeys" },
+    { name = "Frank Hutter" },
 ]
 readme = "README.md"
-license = "Apache-2.0"
-homepage = "https://github.com/automl/neps"
-repository = "https://github.com/automl/neps"
-documentation = "https://automl.github.io/neps/"
+license = { file = "LICENSE" }
 keywords = [
     "Neural Pipeline Search",
     "Neural Architecture Search",
@@ -31,7 +28,7 @@ keywords = [
 classifiers = [
   "Development Status :: 4 - Beta",
   "Intended Audience :: Developers",
-  "Intended Audience :: Science/Research",
+  "Intended Audience :: Science/Research", 
   "Natural Language :: English",
   "License :: OSI Approved :: Apache Software License",
   "Operating System :: POSIX :: Linux",
@@ -42,49 +39,67 @@ classifiers = [
   "Topic :: Scientific/Engineering :: Artificial Intelligence",
   "Topic :: System :: Distributed Computing",
 ]
-packages = [{ include = "neps" }, { include = "neps_examples" }]
+requires-python = ">=3.10,<3.12"
 
+dependencies = [
+    "ConfigSpace>=0.7,<1.0",
+    "grakel>=0.1,<0.2",
+    "numpy>=1.0,<2.0",
+    "pandas>=2.0,<3.0",
+    "networkx>=2.6.3,<3.0",
+    "nltk>=3.6.4,<4.0",
+    "scipy>=1.13.1",
+    "torch>=2.0.1",
+    "matplotlib>=3.0,<4.0",
+    "more-itertools",
+    "portalocker>=2.0,<3.0",
+    "seaborn>=0.13,<0.14",
+    "pyyaml>=6.0,<7.0",
+    "tensorboard>=2.0,<3.0",
+    "typing-extensions",
+    "torchvision>=0.8.0",
+    "ifbo>=0.3.10",
+    "botorch>=0.12",
+    "gpytorch==1.13.0",
+]
 
-[tool.poetry.dependencies]
-python = ">=3.10,<3.12"
-ConfigSpace = "^0.7"
-grakel = "^0.1"
-numpy = "^1"
-pandas = "^2"
-networkx = "^2.6.3"
-nltk = "^3.6.4"
-scipy = ">=1.13.1"
-torch = ">=2.0.1"
-matplotlib = "^3"
-more-itertools = "*"
-portalocker = "^2"
-seaborn = "^0.13"
-pyyaml = "^6"
-tensorboard = "^2"
-typing-extensions = "*"
-torchvision = ">=0.8.0"
-ifbo = ">=0.3.10"
-botorch = ">=0.12"
-gpytorch = "1.13.0"
+[project.urls]
+homepage = "https://github.com/automl/neps"
+repository = "https://github.com/automl/neps"
+documentation = "https://automl.github.io/neps/"
 
-[tool.poetry.group.dev.dependencies]
-ruff = "*"
-pre-commit = "^3"
-mypy = "^1"
-pytest = "^7"
-pytest-cases = "^3"
-types-PyYAML = "^6"
-mkdocs-material = "*"
-mkdocs-autorefs = "*"
-mkdocs-gen-files = "*"
-mkdocstrings = { extras = ["python"], version = "*" }
-mkdocs-literate-nav = "*"
-mike = "*"
-black = "*"                                           # This allows mkdocstrings to format signatures in the docs
+[project.optional-dependencies]
+dev = [
+    "ruff",
+    "pre-commit>=3,<4",
+    "mypy>=1,<2",
+    "pytest>=7,<8",
+    "pytest-cases>=3,<4",
+    "types-PyYAML>=6,<7",
+    "mkdocs-material",
+    "mkdocs-autorefs",
+    "mkdocs-gen-files",
+    "mkdocstrings[python]",
+    "mkdocs-literate-nav",
+    "mike",
+    "black",  # This allows mkdocstrings to format signatures in the docs
+]
+
+[tool.setuptools.packages.find]
+include = [
+    "neps",
+    "neps.*",
+    "neps_examples",
+]
+exclude = []
 
 [build-system]
-requires = ["poetry-core>=1.1.0"]
-build-backend = "poetry.core.masonry.api"
+requires = [
+    "setuptools>=68.2.2",
+    "wheel>=0.41.2",
+]
+
+build-backend = "setuptools.build_meta"
 
 # TODO(eddiebergman): Include more of these as we go on in migration
 # "tests",