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missing test script
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Eric Kofman committed Nov 21, 2024
1 parent 4b24baa commit a99dfe4
Showing 1 changed file with 17 additions and 0 deletions.
17 changes: 17 additions & 0 deletions tests/singlecell_tests/scripts/only_5_cells_bulk_mode_test.sh
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mypython=$1

$mypython $MARINE/marine.py \
--bam_filepath \
$MARINE/tests/singlecell_tests/bams/9_3000526_only_5_cells.bam \
--annotation_bedfile_path \
$MARINE/annotations/cellranger-mm10-3.0.0.annotation.genes.bed \
--output_folder \
$MARINE/tests/singlecell_tests/only_5_cells_bulk_mode_test \
--min_dist_from_end \
0 \
--min_base_quality \
0 \
--cores \
4 \
--strandedness 2 --verbose \
--contigs "9" --interval_length 32000000

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