os move

YeoLab · Nov 21, 2024 · 4b24baa · 4b24baa
1 parent d0c13f2
commit 4b24baa
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/marine.py b/marine.py
@@ -490,7 +490,7 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], strand
             # Take care of the case where no contigs are specified, so that all contigs available are processed
             broken_up_contigs = [[]]
         else:
-            if barcode_whitelist_file:
+            if barcode_tag:
                 # For single cell sequencing we will only process this many contigs at a time
                 broken_up_contigs = get_broken_up_contigs(contigs, num_per_sublist)
 

diff --git a/tests/integration_tests_auto_check.py b/tests/integration_tests_auto_check.py
@@ -1,5 +1,8 @@
 import pandas as pd
 import sys
+import os
+from glob import glob
+
 
 test_name_to_expectations = {
     "edge_case_test": {
@@ -292,8 +295,7 @@
             print("\n\t ~~~ {} FAILED! ~~~\n".format(test_name))
             failures += 1
 
-import os
-from glob import glob
+
 
 tests_dir = sys.argv[1]
 print('tests dir is {}'.format(tests_dir))