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Wilson Sayres Lab ARCHIVED Repositories

Codes from Wilson Sayres Lab projects - ARCHIVED VERSION

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  1. BioinformaticsIntroduction BioinformaticsIntroduction Public

    28 3

  2. XYalign XYalign Public

    Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data

    Python 23 5

  3. Useful_code Useful_code Public

    Perl 7 7

  4. AlignmentProcessor AlignmentProcessor Public

    Prepares CDS fasta Alignments for use with several programs

    Python 6 3

  5. ASEofBases ASEofBases Public

    Allele Specific Expression method and pipeline for analysis

    R 4 3

  6. TumorHeterogeneity TumorHeterogeneity Public

    Scala 3 1

Repositories

Showing 10 of 24 repositories
  • BioinformaticsIntroduction Public
    WilsonSayresLab/BioinformaticsIntroduction’s past year of commit activity
    28 3 0 1 Updated May 20, 2020
  • XYalign Public

    Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data

    WilsonSayresLab/XYalign’s past year of commit activity
    Python 23 5 5 0 Updated Apr 11, 2019
  • PopInf Public

    Method to infer the major population (or populations) ancestry of a sample or set of samples.

    WilsonSayresLab/PopInf’s past year of commit activity
    Python 1 0 0 0 Updated Mar 1, 2019
  • Neoepitope_Prediction Public
    WilsonSayresLab/Neoepitope_Prediction’s past year of commit activity
    Python 2 2 0 0 Updated Feb 21, 2019
  • XY_RNAseq Public

    Alignment and filtering effects on RNAseq analysis on the X and Y chromosomes

    WilsonSayresLab/XY_RNAseq’s past year of commit activity
    R 3 3 0 1 Updated Dec 11, 2018
  • eQTL Public
    WilsonSayresLab/eQTL’s past year of commit activity
    0 0 0 0 Updated Sep 21, 2018
  • AlignmentProcessor Public

    Prepares CDS fasta Alignments for use with several programs

    WilsonSayresLab/AlignmentProcessor’s past year of commit activity
    Python 6 GPL-3.0 3 0 0 Updated Aug 3, 2018
  • SexDiffExpression Public

    RNAseq analysis code, specifically focusing on sex differences in expression

    WilsonSayresLab/SexDiffExpression’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Jun 27, 2018
  • TurkanaSelection Public
    WilsonSayresLab/TurkanaSelection’s past year of commit activity
    1 GPL-3.0 0 0 0 Updated Jun 27, 2018
  • PcTF_differential_expression Public

    Code for analyzing RNAseq data from cell lines expressing PcTF, and code for making figures

    WilsonSayresLab/PcTF_differential_expression’s past year of commit activity
    Shell 0 2 0 0 Updated Mar 24, 2018
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