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@WilsonSayresLab Wilson Sayres Lab ARCHIVED Repositories

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    24 repositories

    • BioinformaticsIntroduction

      Public
      bioinformaticspythonunixtutorialclusterlabsftpslurmbatch-scripttrainee
      3•28•0•1•Updated May 20, 2020May 20, 2020

    • XYalign

      Public
      Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data
      Python
      •
      Other
      •5•23•5•0•Updated Apr 11, 2019Apr 11, 2019

    • PopInf

      Public
      Method to infer the major population (or populations) ancestry of a sample or set of samples.
      Python
      •0•1•0•0•Updated Mar 1, 2019Mar 1, 2019

    • Neoepitope_Prediction

      Public
      Python
      •2•2•0•0•Updated Feb 21, 2019Feb 21, 2019

    • XY_RNAseq

      Public
      Alignment and filtering effects on RNAseq analysis on the X and Y chromosomes
      R
      •3•3•0•1•Updated Dec 11, 2018Dec 11, 2018

    • eQTL

      Public
      0•0•0•0•Updated Sep 21, 2018Sep 21, 2018

    • AlignmentProcessor

      Public
      Prepares CDS fasta Alignments for use with several programs
      Python
      •
      GNU General Public License v3.0
      •3•6•0•0•Updated Aug 3, 2018Aug 3, 2018

    • SexDiffExpression

      Public
      RNAseq analysis code, specifically focusing on sex differences in expression
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jun 27, 2018Jun 27, 2018

    • TurkanaSelection

      Public
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 27, 2018Jun 27, 2018

    • PcTF_differential_expression

      Public
      Code for analyzing RNAseq data from cell lines expressing PcTF, and code for making figures
      Shell
      •2•0•0•0•Updated Mar 24, 2018Mar 24, 2018

    • Teaching_GeneticDrift

      Public
      R
      •0•0•0•0•Updated Jan 23, 2018Jan 23, 2018

    • Nasonia

      Public
      Wasp parent of origin effects
      0•0•0•0•Updated Sep 20, 2017Sep 20, 2017

    • Coverage_BSP

      Public
      How does reduced coverage affect demographic inference in Bayesian Skyline Plots
      0•0•0•0•Updated Aug 24, 2017Aug 24, 2017

    • ASEofBases

      Public
      Allele Specific Expression method and pipeline for analysis
      R
      •3•4•0•0•Updated May 30, 2017May 30, 2017

    • myeloma

      Public
      This repository contains the code used in the myeloma/selection project.
      0•0•0•0•Updated Apr 18, 2017Apr 18, 2017

    • Placenta1

      Public
      Reanalysis of preexisting placenta RNAseq data
      0•0•0•0•Updated Oct 26, 2016Oct 26, 2016

    • Y_diversity

      Public
      Scripts for modeling and empirically calculating diversity on Y and mtDNA. Potentially to expand at a later date.
      0•0•0•0•Updated Oct 26, 2016Oct 26, 2016

    • Useful_code

      Public
      Perl
      •7•7•0•0•Updated Oct 17, 2016Oct 17, 2016

    • MMB_flies

      Public
      0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

    • TumorHeterogeneity

      Public
      Scala
      •1•3•0•0•Updated Sep 6, 2016Sep 6, 2016

    • MMB_apes

      Public
      Codes related to studying male mutation bias across apes
      R
      •1•0•0•0•Updated Jul 29, 2016Jul 29, 2016

    • Anole_expression

      Public
      Understanding variation in squamate sex determination and sex chromosome evolution
      R
      •2•2•0•0•Updated Jul 26, 2016Jul 26, 2016

    • PARdiversity

      Public
      Perl
      •1•1•0•0•Updated Mar 23, 2016Mar 23, 2016

    • Diversity_simulations

      Public
      1•0•0•0•Updated Oct 24, 2015Oct 24, 2015