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feat: preprocess with tiling#504

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cpaniaguam merged 34 commits intomainWilhelmusLab/IceFloeTracker.jl:mainfrom 503-orchestrate-into-a-macro-functionWilhelmusLab/IceFloeTracker.jl:503-orchestrate-into-a-macro-functionCopy head branch name to clipboardNov 26, 2024

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Commits on Nov 9, 2024

• feat: preprocess with tiling

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Commits on Nov 11, 2024

• Update preprocess_tiling.jl

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Commits on Nov 15, 2024

• feat: preprocess_tiling

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• feat: add se_disk2

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Commits on Nov 19, 2024

• Merge branch 'main' into 503-orchestrate-into-a-macro-function

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• fix: rename ref_img to ref_image for consistency in preprocess_tiling function

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• test: preprocess_tiling

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• feat: include preprocess_tiling.jl in IceFloeTracker.jl

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• feat: enhance test for preprocess_tiling with additional image processing steps

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• feat: add rgb2gray function to convert RGB channels to grayscale

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• feat: re-include preprocess_tiling.jl in IceFloeTracker.jl for improved functionality

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• feat: add overloaded to_uint8 function for single numeric input

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Commits on Nov 20, 2024

• feat: move get_ice_masks helpers to ice_masks

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• chore: remove unused get_new2 and get_new3 functions from preprocess_tiling.jl

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• refactor: update preprocess_tiling.jl to process RGB channels and convert to grayscale

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• test: get_ice_masks and related functions

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• fix: update get_ice_labels_mask to use a default factor of 255 and improve ice label processing logic

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• test: update assertions in test-get-ice-masks.jl to use @test macro

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• fix: correct typo in log message and update ice mask processing function

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• test: update kmeans_segmentation call and adjust expected ice mask sum

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• fix: use k=3 for kmeans seg for tiled workflow

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• fix: add default k parameter to get_ice_masks function

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• chore: format

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• fix: add k parameter for kmeans segmentation in ice masks parameters

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• refactor: make coherent groups in preprocess)tiling

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• fix: update watershed function to return boolean boundary map

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• fix: return BitMatrix from get_final function for improved data handling

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• fix: optimize get_holes function for improved image processing and memory handling

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• fix: update get_segment_mask to use watershed1 for improved segmentation

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• fix: refactor watershed2 function to remove async tasks

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• test: preprocess_tiling

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Commits on Nov 25, 2024

• Update src/ice_masks.jl

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• docs: update docstring

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• docs: update rgb2gray

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