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Update test_r.yaml
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try using shell to run as R
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jbousquin authored Jan 17, 2024
1 parent 0c38a81 commit f53d534
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion .github/workflows/test_r.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -58,10 +58,11 @@ jobs:
python -m pip install --no-deps .
pip install -r requirements.txt
- name: point R to pip env
- name: Run pip env using R reticulate
run: |
install.packages("reticulate")
import("harmonize_wq")
shell: Rscript {0}
- name: Run pytest
run: pytest -v harmonize_wq

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