Code

187 - pyside6#208

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thompson318 merged 247 commits intomasterSciKit-Surgery/scikit-surgeryvtk:masterfrom 187-pyside6SciKit-Surgery/scikit-surgeryvtk:187-pyside6Copy head branch name to clipboardMar 7, 2023

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Commits on Jan 24, 2023

• Issue #187 changes pyside2 to pyside6

  

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• Issue #187 requirements match setup

  

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• Issue #187 try installing libgl1

  

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• Issue #187 libegl-dev

  

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• Issue #187 set margins depreciated, use setcontentsmargins

  

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• Issue #187 add close event and finalize the widget

  

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• Issue #187 add close to test rendering generator

  

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• Issue #187 pylint updates

  

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• Issue #181 addes finalize to stereo widget

  

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• Issue #181 try holding back vtk version

  

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• Issue #187 removed old library path from ci.yml

  

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• Issue #187 try using pytest-qt-app

  

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• Issue #187 put library path back in

  

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• Issue #187 put xvfb back in

  

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• updates pyside6 in docs/tuto../overlay_window.ipynb; (#187)

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• removes duplicated closeEvent (#187)

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Commits on Jan 25, 2023

• optimises imports; fixes typos; (#187)

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• in ci.yml adds python version from matrix & adds -v -s for pytest; (#187)

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Commits on Jan 30, 2023

• optimise imports conftest.py; adds init_widget in setup_vtk_overlay_window; (#187)

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• init_widget=True in setup_vtk_overlay_window > conftest.py (#187)

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• init_widget_flag with platform.system(), sorting out local tests (#187)

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• adds else for other OSs with init_widget_flag=True (#187)

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• adds namigs for used and nonused variables and optimise imports for test_vtk_overlay_window; (#187)

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• uses platform.system; optimise imports; reformat code > test_liver_overlay.py; (#187)

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• adding better variable naming @ test_liver_overlay.py (#202; #187)

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• reset to 8cf0d9e and renamed input_image_file (#187)

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Commits on Feb 1, 2023

• updates PySide6 in tox.ini; (#187)

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• to test only conftest.py and test_requirements; (#187)

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• adds sudo apt-get update in ci to sort libegl-dev 404 not found; (#187)

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• ✔️ local unit tests/models/test_surface_model_loader.py; (#203, #187)

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• 🔴 test_surface_model_loader_2_in_assembly_on_its_own > tests/models/test_surface_model_loader.py; (#203, #187)

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• remove unnecessary parenthesis vtk_camera_model.py (#203, #187)

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• adds further packages to ci.yml pylint (#203, #187)

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• updates pylintc overgeneral-exceptions=builtins.Exception (#203, #187)

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• adds version of pylint>=2.16.0 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.0 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.1 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.2 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.3 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.4 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.5 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.6 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.7 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.8 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.9 in requirements-dev.txt (#203, #187)

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• pylint>=2.15.10 in requirements-dev.txt (#203, #187)

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• ci deploy to ubuntu-22.04 with py37; (#203, #187)

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• ci deploy to ubuntu-22.04 with py36; (#203, #187)

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• ci deploy to ubuntu-18.04 with py37; (#203, #187)

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• ci deploy to ubuntu-20.04 with py37; (#203, #187)

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• ci deploy to ubuntu-18.04 with py36; (#203, #187)

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• ci deploy to ubuntu-18.04 with py36; bringing back the passed yml (#203, #187)

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• ci deploy to ubuntu-20.04 with py37; pylint>=2.16.0; (#203, #187)

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• ✔️ local unit tests/models/test_voxelise.py; (#203 #187)

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• ✔️ local unit tests/models/test_vtk_cylinder_model.py; (#203 #187)

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• leave out test_cylinder_model > tests/models/test_vtk_cylinder_model.py; (#203 #187)

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• ✔️ local unit tests/models/test_vtk_image_model.py; (#203 #187)

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• 🔴 test_image_model_overlay in remote tests/models/test_vtk_image_model.py; (#203 #187)

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Commits on Feb 2, 2023

• ✔️ local unit tests/models/test_vtk_point_model.py; (#203 #187)

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• ✔️ local unit tests/models/test_vtk_sphere_model.py; (#203 #187)

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• 🔴 test_sphere_model_3_points in remote tests/models/test_sphere_model.py; (#203 #187)

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• ✔️ local unit tests/models/test_vtk_surface_model_directory_loader.py; (#203 #187)

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• ❌ local unit test_set_texture_regression > tests/models/test_vtk_surface_model.py (#203 #187)

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• ✔️ local tests/models/test_vtk_surface_model.py (#203 #187)

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• ✔️ local tests/models/test_vtk_unstructured_grid.py (#203 #187)

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• commenting test_valid_set_texture_with_png_format test_flat_shaded_on_coloured_background test_valid_set_texture_with_jpeg_format test_valid_set_texture_with_jpg_format > tests/models/test_vtk_surf…

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• commenting test_valid_unset_texture_when_called_with_none > tests/models/test_vtk_surface_model.py (#203 #187)

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• sets QT_DEBUG_PLUGGGIN=1; (#201)

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• changes to QT_DEBUG_PLUGINS; (#201)

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• platforms was mispelled ci.yml (#203 #187)

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• adds sudo apt-get install libxcb-iccm4 to ci.yml (#203 #187)

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• correction sudo apt-get install libxcb-icccm4 to ci.yml (#203 #187)

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• Issue #187: Install libxcb-image0

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• Issue #187: Add libxcb-keysyms1 to ubuntu CI.

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Commits on Feb 3, 2023

• Issue #187: Add all xcb dependencies.

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• Issue #187: Update xrender and x11-xcb

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• Issue #187: Add libxcb-render-util0

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• adds py310;py311 for ubuntu-latest, windows-latest, macos-latest in ci.yml (#203 #187)

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• adds test_flat_shaded_on_coloured_background; test_valid_set_texture_with_jpeg_format; test_valid_set_texture_with_jpg_format > tests/models/test_vtk_surface_model.py (#203 #187)

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• remote temporal file: t_flat_shaded_on_coloured_background (#203 #187)

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• adds test_valid_unset_texture_when_called_with_none > tests/models/test_vtk_surface_model.py (#203 #187)

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• ❌ local test_set_texture_regression > tests/models/test_vtk_surface_model.py (#203 #187)

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• adds test_sphere_model_3_points > tests/models/test_vtk_sphere_model.py (#203 #187)

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• adds test_image_model_overlay > tests/models/test_vtk_image_model.py (#203 #187)

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• adds test_cylinder_model > tests/models/test_vtk_cylinder_model.py (#203 #187)

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• adds test_surface_model_loader_2_in_assembly_on_its_own > tests/models/test_surface_model_loader.py (#203 #187)

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• comments local test_set_texture_regression > tests/models/test_vtk_surface_model.py (#203 #187)

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• comments test_surface_model_loader_2_in_assembly_on_its_own > tests/models/test_surface_model_loader.py (#203 #187)

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• ✔️ local [06-items] tests/text/test_corner_annotation (#203 #187)

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• ✔️ local [01-items] tests/text/test_large_centred_text.py (#203 #187)

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• ❌ [07-items] fails local test_window_resize tests/text/test_vtk_text.py (#203 #187)

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• comments test_window_resize tests/text/test_vtk_text.py (#203 #187)

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• ✔️ local [06-items] tests/utils/test_matrix_utils.py (#203 #187)

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• ✔️ local [03-items] tests/utils/test_polydata_utils.py (#203 #187)

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• ✔️ local [14-items] tests/utils/test_projection_utils.py (#203 #187)

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• ❌ local [01-items] tests/widgets/test_interlaced_stereo_window.py (#203 #187)

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• comments test_stereo_overlay_window > tests/widgets/test_interlaced_stereo_window.py (#203 #187)

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• ❌ local [02-items] tests/widgets/test_lus_simulator (#203 #187)

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• using vtk with no version (#203 #187)

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• using vtk<=9.2.5 (remote version) instead of vtk<=9.1.0 (#203 #187)

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• comments test_basic_rendering_generator test_matrices_rendering_generator > tests/widgets/test_lus_simulator.py (#203 #187)

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• uncommented items in tests/widgets/test_interlaced_stereo_widow.py tests/widgets/test_lus_simulator.py (#203 #187)

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• commented tests/models/test_vtk_cylinder_model.py (#203 #187)

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• commented test_image_model_overlay > tests/models/test_vtk_image_model.py (#203 #187)

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• commented varoius tests using (vtk...) (#203, #187)

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• commented test_sphere_model_3_points > tests/models/test_vtk_sphere_model (#203, #187)

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• commented tests with (vtk_overlay..) > tests/models/test_vtk_surface_model (#203, #187)

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• commented test_position_correct > tests/text/test_large_centred_text.py (#203, #187)

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• ❌ [04-items] tests/widgets/test_rendering_generator.py (#203, #187)

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• commented test_basic_rendering_generator > tests/widgets/test_rendering_generator.py (#203, #187)

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• commented test_mask_generator > tests/widgets/test_rendering_generator.py (#203, #187)

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• commented test_mask_generator_w_all_shading > tests/widgets/test_rendering_generator.py (#203, #187)

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• commented test_mask_generator_w_some_shading > tests/widgets/test_rendering_generator.py (#203, #187)

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• ❌ adds local tests/widgets/test_vtk_reslice.py (#203, #187)

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• commented test_slice_viewer; test_mouse_scroll_slice_viewer > tests/widgets/test_vtk_reslice.py (#203, #187)

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Commits on Feb 6, 2023

• ✔️ local [12-items] tests/widgets/test_vtk_overlay_window.py (#203 #187)

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• commented [12-items] tests/widgets/test_vtk_overlay_window.py (#203 #187)

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• uncomment test_vtk_render_window_settings tests/widgets/test_vtk_overlay_window.py (#203 #187)

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• adds recommended Qt Platform Plugin Dependencies (#203 #187)

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• adds install libgl1 to ci.yml (#203 #187)

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• adds install libgl1-mesa-glx to ci.yml (#203 #187)

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• adds install libxrender1 and reorganise dependneices order and adds missing ones from previous commits to ci.yml (#203 #187)

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• adds libegl-dev to ci.yml (#203 #187)

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• adds remove repeated packages with no dev to ci.yml (#203 #187)

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• adds all ubuntu dependencies as dev to ci.yml (#203 #187)

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• just xvfb > ci.yml (#203 #187)

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• just libxrender1 and reorgnaise dependencies > ci.yml (#203 #187)

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• just libx11-xcb1 and updates names > ci.yml (#203 #187)

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• reversing to previous four commits passing dependencies > ci.yml (#203 #187)

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• reverting to actual passing dependencies > ci.yml (#203 #187)

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• adds libegl related dependencies > ci.yml (#203 #187)

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• remove duplicated dependencies > ci.yml (#203 #187)

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• reorganise dependencies > ci.yml (#203 #187)

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• adds libxrender1 libx11-xcb1 dependencies > ci.yml (#203 #187)

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• removes libxrender1 libx11-xcb1 and adds libegl-mesa0-dev dependencies > ci.yml (#203 #187)

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• ✔️ local [02-items] tests/widgets/test_vtk_overlay_window_with_outlines.py (#203 #187)

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• commented [02-items] tests/widgets/test_vtk_overlay_window_with_outlines.py (#203 #187)

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• ❌ local [01-items] tests/camera/test_liver_overlay.py (#203 #187)

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• adds comment on qt requirements and removes vtk_test_app.py script (#203 #187)

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• QT_DEBUG_PLUGINS=0 in ci.yml (#203 #187)

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• commented tests/models/test_surface_model_loader.py::test_surface_model_loader_2_in_assembly_on_its_own (#203 #187)

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• using pylint<=2.16.1 (#203 #187)

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• ✔️ passed 6 local tests/widgets/test_vtk_overlay_window.py (#203 #187)

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• ✔️ passed local tests/widgets/test_vtk_overlay_window.py::test_basic_cone_overlay (#203 #187)

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• ✔️ passed 12 local tests/widgets/test_vtk_overlay_window.py (#203 #187)

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• ✔️ passed 05-items local tests/camera/test_vtk_camera_model.py (#203 #187)

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• ✔️ passed 32-items and re-order tests/models/test_vtk_surface_model.py::test_valid_set_texture_with_png_format (#203 #187)

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• ❌ faulty tests/models/test_vtk_surface_model.py::test_set_texture_regression (#203 #187)

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• adds missin sksurgeryimage.utilities.utilities.are_similar tests/models/test_vtk_surface_model.py::test_set_texture_regression (#203 #187)

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• ❌ uncommented tests/widgets/test_interlaced_stereo_window.py::test_stereo_overlay_window which does not work in local machine (#203 #187)

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• ❌ uncommented tests/widgets/test_lus_simulator.py::test_matrices_rendering_generator which does not work in local machine (#203 #187)

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• ❌ tests/widgets/test_vtk_reslice.py::test_slice_viewer (#203 #187)

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• ❌ tests/widgets/test_vtk_reslice.py::test_mouse_scroll_slice_viewer (#203 #187)

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Commits on Feb 9, 2023

• ❌ adds and refactors few bits of tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187 #202 #203)

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• ❌ change ref_output_image_path in tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187 #202 #203)

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• ❌ adds comment for vtk_win_to_img_filter.Update() (#187 #202 #203)

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• ❌ swap X virtual frame buffer in ci.yml (#187 #202 #203)

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• matching requirements with ve (#187 #203)

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Commits on Feb 13, 2023

• fix spelling errors and cosmetic changes in VTKOverlayWindow(); adds test_basic_pyside_vtk_pipeline (#187, #202, #203)

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• comments test_overlay_liver_points and fix linting errors in vtk_overlay_window.py (#187, #202, #203)

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• ✔️ adds changes to pass local tests in tests/widgets/test_vtk_overlay_window.py (#187, #202, #203)

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• ✔️ adds changes to pass local tests in tests/models/test_vtk_cylinder_model.py::test_cylinder_model (#187, #202, #203)

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• ✔️ refactors and passed local tests/models/test_vtk_surface_model.py::test_set_texture_regression (#187, #202, #203)

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• ✔️ removes unnecesary condtions ofr ci tests in tests/models/test_vtk_surface_model.py::test_set_texture_regression (#187, #202, #203)

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• ✔️ refactors and passed local unit tests of tests/models/test_surface_model_loader.py::test_surface_model_loader_2_in_assembly_on_its_own (#187, #202, #203)

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• ✔️ refactors and passed local units adding missing iterator and event loop > tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187, #202, #203)

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• ✔️ checking remote values of reference_image and rendered_image > tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187, #202, #203)

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• ✔️ printing reference_image and rendered_image shapes and filenames > tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187, #202, #203)

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• ✔️ uncomment assert > tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187, #202, #203)

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Commits on Feb 14, 2023

• ✔️ adds Initialise() and Start() calls in tests/camera/test_vtk_camera_model.py::test_camera_projection (#187, #202, #203)

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• ✔️ comment assert are_similar() > tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187, #202, #203)

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• ✔️ uncomment assert are_similar() and comment in_github_ci > tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187, #202, #203)

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• ✔️ in_github_ci for Linux changes ref_image_path > tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187, #202, #203)

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• ✔️ adding few comments tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187, #202, #203)

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Commits on Feb 15, 2023

• ✔️ adds init_widget in VTKRenderingGenerator; passed local unit test of tests/widgets/test_rendering_generator.py::test_basic_rendering_generator (#187, #202, #203)

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• ✔️ adds qwidgets and qvtk renderer for basic test of tests/widgets/test_vtk_overlay_window.py::test_basic_pyside_vtk_pipeline (#187, #202, #203)

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• ✔️ refactors pipeline of VTKRenderingGenerator to locally pass tests/widgets/test_rendering_generator.py::test_basic_rendering_generator (#187, #202, #203)

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Commits on Feb 16, 2023

• ✔️ fixes to locally pass test but fails due to diff = mask - ref_img > tests/widgets/test_rendering_generator.py::test_mask_generator (#187, #202, #203)

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• ✔️ fixes to locally pass test but fails due to diff = mask - ref_img > tests/widgets/test_rendering_generator.py::test_mask_generator_w_all_shading (#187, #202, #203)

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• ✔️ fixes to locally pass test but fails due to diff = mask - ref_img > tests/widgets/test_rendering_generator.py::test_mask_generator_w_some_shading (#187, #202, #203)

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• uncomment [diff = mask - ref_img] > tests/widgets/test_rendering_generator.py::test_mask_generator (#187, #202, #203)

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• ✔️ mask_resize to locally pass > tests/widgets/test_rendering_generator.py::test_mask_generator (#187, #202, #203)

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• ✔️ removes mask_resize to locally pass > tests/widgets/test_rendering_generator.py::test_mask_generator (#187, #202, #203)

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Commits on Feb 20, 2023

• ✔️ local tests/widgets/test_rendering_generator.py::test_mask_generator and refactors VTKRenderingGenerator pipeline (#187, #202, #203)

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Commits on Feb 21, 2023

• ✔️ fix local vtk_rendering_generator.py:69:0: C0301: Line too long (94/80) (line-too-long) (#187, #202, #203)

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• ✔️ local tests/widgets/test_rendering_generator.py::test_mask_generator_w_all_shading (#187, #202, #203)

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• ✔️ local tests/widgets/test_rendering_generator.py::test_mask_generator_w_some_shading (#187, #202, #203)

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Commits on Feb 22, 2023

• ✔️ local tests/widgets/test_rendering_generator.py::test_basic_rendering_generator (#187, #202, #203)

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• ✔️ adds tests/widgets/test_rendering_generator.py::test_basic_rendering_generator_zbuffer and passed locally (#187, #202, #203)

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• ✔️ refactors tests/models/test_vtk_image_model.py to be passed locally (#187, #202, #203)

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• adds 3.12-dev to ci.yml (#187, #202, #203)

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• adds 3.12 to ci.yml experimental (#187, #202, #203)

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• updates version of actions in ci.yml (#187, #202, #203)

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• setting up 3.12-dev to ci.yml (#187, #202, #203)

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Commits on Feb 23, 2023

• ✔️ passed local test of tests/widgets/test_interlaced_stereo_window.py::test_stereo_overlay_window but screen is black; refactors VTKStereoInterlacedWindow; (#187, #202, #203)

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Commits on Feb 27, 2023

• ✔️ 155 tests passed locally; adds decorator @skiplinux_pytest tests/widgets/test_rendering_generator.py; (#187, #202, #203)

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• renames decorator as @skip_pytest_in_linux (#187, #202, #203)

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• ✔️ 156 tests passed locally; adding tests/text/test_vtk_text.py::test_window_resize (#187, #202, #203)

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• ✔️ adds decorator @skip_pytest_in_oss to skip in all OSs tests/text/test_vtk_text.py::test_window_resize (#187, #202, #203)

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• ✔️ 154 tests passed locally; adds decorator @skip_pytest_in_oss tests/widgets/test_interlaced_stereo_window.py (#187, #202, #203)

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Commits on Feb 28, 2023

• locally pass by uncommenting first lines of tests/widgets/test_lus_simulator.py (#187, #202, #203)

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• local failures by uncommenting lus.VTKLUSSimulator in tests/widgets/test_lus_simulator.py::test_basic_rendering_generator (#187, #202, #203)

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• unit test in linux is not stable as it fails due to innapropriate class inherirtance; also refactors prints in tests/widgets/test_lus_simulator.py::test_basic_rendering_generator (#187, #202, #203)

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• unit test in linux is not stable as it fails due to innapropriate class inherirtance; tests/widgets/test_lus_simulator.py::test_matrices_rendering_generator (#187, #202, #203)

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Commits on Mar 1, 2023

• adds decorator @skip_pytest_in_linux_and_none_ci for tests/widgets/test_lus_simulator.py (#187, #202, #203)

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• removes python-ver 3.7 in ci.yml due to end-of-support 2023-06-27; deploy in ubuntu22.02 py38; updates pyversion to 3.8 in tox (#187, #202, #203)

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• comments widget_vtk_overlay.Start() in tests/camera/test_liver_overlay.py::test_overlay_liver_points (#187, #202, #203)

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• removes docs/tutorials/overlay_window.ipynb and updates tox for docs (#187, #202, #203, #206)

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Commits on Mar 2, 2023

• update main README.rst & minor changes in CONTRIBUTING.rst (#187)

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• fix links in main README.rst (#187)

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Commits on Mar 3, 2023

• refactors unit tests skipif messages (#187)

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• fixing os.environ variables which are not avaible in CI 1/n (#187)

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• fixing os.environ variables which are not avaible in CI 2/n (#187)

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• fixing os.environ variables which are not avaible in CI 3/n (#187)

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Commits on Mar 6, 2023

• adds minor changes to main README and logo (#187)

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• amends path of logo 1/n (#187)

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