Merge pull request #1196 from SPAAM-community/czechia #427
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| name: AncientMetagenomeDir GeoJSON updates | |
| on: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| live-status-geosjon-update: | |
| runs-on: ubuntu-latest | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GH_ACTIONS_COMMIT_ACTION }} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| activate-environment: geojson | |
| environment-file: assets/analysis/geojson_environment.yml | |
| auto-activate-base: true | |
| channels: conda-forge,defaults | |
| use-mamba: true | |
| - name: Generate map geojson | |
| run: | | |
| python assets/analysis/create_geojson.py \ | |
| --environmental ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples.tsv \ | |
| --meta_host ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv \ | |
| --single_host ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv \ | |
| --geojson assets/images/figures/ancientmetagenomedir.geojson | |
| - uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_message: "[skip ci] Update AncientMetagenomeDir geojson" | |
| push_options: --force |