HiC map generation

Added HiC map generation to the pipeline

Threading & more memory

1.9

threading & more memory

More threading

1.8

even more threading

Multithread for samtools

1.7

multithread samtools and bigwig

Fix of paths

1.6

fix paths

Fix for standalone

1.5

fix for singularity/docker standalone

Fixes to the pipeline

1.4

fixes

Adding additional ChIP-Seq data.

When ChIP-Seq is available for the experiment, it can be provided, and the ChIP-Seq peaks will be used instead of calling peaks from HiChIP. Read README for more information.

Fix for docker

1.2

docker

Organised output

1.1

organised output folder