Skip to content
@SFGLab

Structural and Functional Genomics Laboratory

PLEWCZYNSKI LAB: Laboratory of Bioinformatics and Computational Genomics (LBCG @ MiNI WUT) Laboratory of Functional and Structural Genomics (LFSG @ CeNT UW)

Popular repositories Loading

  1. ConsensuSV-pipeline ConsensuSV-pipeline Public

    Automatised pipeline of ConsensuSV workflow.

    Python 23 1

  2. bertrand bertrand Public

    Jupyter Notebook 9

  3. ConsensuSV-core ConsensuSV-core Public

    A tool for getting consensus of SVs.

    Python 7 1

  4. HiCDiffusion HiCDiffusion Public

    Python 6 1

  5. ConsensuSV-ONT-pipeline ConsensuSV-ONT-pipeline Public

    Python 5 1

  6. nf-hichip nf-hichip Public

    Pipeline for processing HiChIP data.

    Jupyter Notebook 2 1

Repositories

Showing 10 of 30 repositories
  • ChromMovie Public

    Model for simultaneous 3D chromatin modeling from scHi-C maps

    SFGLab/ChromMovie’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 3, 2024
  • pyLoopSage Public

    Updated version of the stochastic loop extrusion model: LoopSage with capability to run incredibly fast, parallelized across CPU cores. This package is even more user-friendly and it can be installed via PyPI.

    SFGLab/pyLoopSage’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 21, 2024
  • LoopSage Public

    An energy-based model for loop extrusion.

    SFGLab/LoopSage’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 19, 2024
  • nf-hichip Public

    Pipeline for processing HiChIP data.

    SFGLab/nf-hichip’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Nov 8, 2024
  • MultiMM Public

    A genomewide multiscale energy minimization model.

    SFGLab/MultiMM’s past year of commit activity
    Python 1 GPL-2.0 0 0 0 Updated Oct 27, 2024
  • HiCDiffusion Public
    SFGLab/HiCDiffusion’s past year of commit activity
    Python 6 MIT 1 0 0 Updated Oct 24, 2024
  • intrinsic_linking_analysis Public

    Analysis for the "Intrinsic linking of chromatin fiber in human cells" manuscript.

    SFGLab/intrinsic_linking_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 16, 2024
  • cKNOTs Public

    Package for finding and analysing links in chromatin using cKNOTs: a graph-theory approach for finding links in human DNA.

    SFGLab/cKNOTs’s past year of commit activity
    C++ 0 0 0 0 Updated Oct 16, 2024
  • Polymer_model_benchmark Public
    SFGLab/Polymer_model_benchmark’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Sep 22, 2024
  • gStripe Public

    Graph-based architectural stripe caller.

    SFGLab/gStripe’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Sep 19, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…