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Feature/clean dockerfile #14

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merged 8 commits into from
Nov 28, 2023
Merged

Feature/clean dockerfile #14

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b9d847b
fix(dockerfile)!: remove --platform in Dockerfile
AlexAxthelm Nov 16, 2023
167bf71
fix: consolidate RUN commands
AlexAxthelm Nov 16, 2023
feb2556
fix: Do not pass system dependencies as ARG
AlexAxthelm Nov 16, 2023
970abf3
fix!: Pin System dependency versions
AlexAxthelm Nov 16, 2023
b4bb103
feat!: Do not let pak install system dependencies
AlexAxthelm Nov 16, 2023
dae22a4
fix: install additional Sys deps required by PACTA
AlexAxthelm Nov 16, 2023
6ffcbc9
Merge branch 'main' into feature/clean-dockerfile
cjyetman Nov 17, 2023
c726bb7
Merge branch 'main' into feature/clean-dockerfile
cjyetman Nov 17, 2023
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27 changes: 12 additions & 15 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -8,9 +8,8 @@
# https://packagemanager.posit.co/cran/__linux__/jammy/2023-10-30

# set proper base image
ARG PLATFORM="linux/amd64"
ARG R_VERS="4.3.1"
FROM --platform=$PLATFORM rocker/r-ver:$R_VERS
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FROM rocker/r-ver:$R_VERS

# set Docker image labels
LABEL org.opencontainers.image.source=https://github.com/RMI-PACTA/workflow.pacta
Expand All @@ -29,25 +28,23 @@ ARG DEBIAN_FRONTEND="noninteractive"
ARG DEBCONF_NOWARNINGS="yes"

# install system dependencies
ARG SYS_DEPS="\
git \
libcurl4-openssl-dev \
libssl-dev \
openssh-client \
wget \
"
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RUN apt-get update \
&& apt-get install -y --no-install-recommends $SYS_DEPS \
&& apt-get install -y --no-install-recommends \
git=1:2.34.* \
libcurl4-openssl-dev=7.81.* \
libicu-dev=70.* \
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libssl-dev=3.0.* \
openssh-client=1:8.* \
pandoc=2.9.2.* \
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wget=1.21.* \
&& chmod -R a+rwX /root \
&& rm -rf /var/lib/apt/lists/*

# set frozen CRAN repo
ARG CRAN_REPO="https://packagemanager.posit.co/cran/__linux__/jammy/2023-10-30"
RUN echo "options(repos = c(CRAN = '$CRAN_REPO'))" >> "${R_HOME}/etc/Rprofile.site"

# install packages for dependency resolution and installation
RUN Rscript -e "install.packages('pak')"
RUN Rscript -e "pak::pkg_install('renv')"
RUN echo "options(repos = c(CRAN = '$CRAN_REPO'), pkg.sysreqs = FALSE)" >> "${R_HOME}/etc/Rprofile.site" \
# install packages for dependency resolution and installation
&& Rscript -e "install.packages('pak'); pak::pkg_install('renv')"

# copy in everything from this repo
COPY . /
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